Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F14
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.067
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.27
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.5
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.067
Identities = 32/153 (20%), Positives = 58/153 (37%)
Frame = +2
Query: 233 TASLMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGF 412
T + S S L+T T + + ++ S T P ++ + +T+
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
Query: 413 VLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTL 592
C + + ++S SW T P TS S+V S +++ T
Sbjct: 589 TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTS 648
Query: 593 KTFTLSDSLYVKFSTLST*WVKYSSWTSFWTEN 691
TFT S S+ S+ +T ++S +S + N
Sbjct: 649 TTFTSSTSISTSSSSTATSSTSFASESSSFYSN 681
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.27
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -2
Query: 386 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 228
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 227 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 66
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -2
Query: 299 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 120
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 119 SSLR 108
+SLR
Sbjct: 200 ASLR 203
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -1
Query: 306 RDGESRVYPAVR-VHNGERDFINDAVN 229
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 505 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 618
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 714 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 535
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 534 LVFNDGTVKIQDQHLDAASF 475
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 714 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 535
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 534 LVFNDGTVKIQDQHLDAASF 475
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 714 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 535
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 534 LVFNDGTVKIQDQHLDAASF 475
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,154
Number of Sequences: 5004
Number of extensions: 71358
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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