Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F14
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                33   0.38 
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              31   1.5  
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)                 31   1.5  
SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)               30   2.0  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)               29   3.6  
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)                  29   3.6  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   4.7  
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)             29   6.2  
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 366 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 193
           D W  A       +  D  +  G      A R    GE D  IND  N++ +++S R+  
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553

Query: 192 RERDQDNHGGFV 157
           +     NHGG+V
Sbjct: 554 KRVQVTNHGGYV 565


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
 Frame = +1

Query: 1   TFPHPTRGRSARPYSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIIL 180
           T P P    +  P   P PT R+P    +  S+ GL+ + +   +    R ++  T    
Sbjct: 638 TLPLPPTDHTHTP---PPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHT 694

Query: 181 IAFSLLVTSRQYIGDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 321
            A++L +  ++++G  +D I      LAV  +   + + FTI   ++G
Sbjct: 695 GAYALNLGIQRWLGIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742


>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
          Length = 155

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 459 VAGNIKQDCLKE*HKTNPLIIFVIFNFVLS 370
           V G +  +C+KE   T+PL++FV  N  +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144


>SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)
          Length = 412

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 392 TNIISGFVLCYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 565
           T+ +S FV+ YS   S F+  + +T  +     +S    +++   S   +  R V  YLS
Sbjct: 139 TSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSS---TLYRFVVVYLS 195

Query: 566 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 676
           T+S R   + T TLS  + V  STLS   V YSS  S
Sbjct: 196 TLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 231



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +2

Query: 392 TNIISGFVLCYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 565
           T+ +S FV+ Y+   S F+  + +T  +      S    +++   S   + SR V  Y S
Sbjct: 73  TSTLSRFVVVYTSTLSRFVVVYSSTLSRFVVVYTSTLSRFVVVYTS---TLSRFVVVYTS 129

Query: 566 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 676
           T+S R   + T TLS  + V  STLS   V YSS  S
Sbjct: 130 TLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 165



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 392 TNIISGFVLCYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 565
           ++ +S FV+ YS   S F+  + +T  +     +S    +++   S   + SR V  Y S
Sbjct: 7   SSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYTS---TLSRFVVVYSS 63

Query: 566 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 676
           T+S R   + T TLS  + V  STLS   V YSS  S
Sbjct: 64  TLS-RFVVVYTSTLSRFVVVYTSTLSRFVVVYSSTLS 99


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 196 LVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYSTFTIPNRLIGRVGKDYVQPGVGPHVEGQ 375
           ++T  Q + DP + I+D+     + T   I  T     +++   G+D +     P  +  
Sbjct: 95  IITGNQVLSDPGEDIIDDYHRRSLATPARISLTIITGKKVLSDSGEDLIDILSDPGEDII 154

Query: 376 DEVKY-HKYYQWVCFVLFFQAILFY 447
           D+  +    Y  +CFV  F  ++ Y
Sbjct: 155 DDYHWSFDVYMMMCFVFVFGCLVEY 179


>SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)
          Length = 294

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   TFPHPTRGRSARPYSRPR 54
           T PH T GR  RP+SRPR
Sbjct: 170 TNPHATEGRCWRPHSRPR 187


>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
          Length = 1062

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   TFPHPTRGRSARPYSRPR 54
           T PH T GR  RP+SRPR
Sbjct: 890 TDPHATEGRRWRPHSRPR 907


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 392 TNIISGFVLCYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 565
           ++ +S FV+ YS   S F+  + +T  +     +S    +++   S   + SR V  Y S
Sbjct: 617 SSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSS---TLSRFVVVYTS 673

Query: 566 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 676
           T+S R   + T TLS  + V  STLS   V YSS  S
Sbjct: 674 TLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 709



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 392 TNIISGFVLCYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 565
           ++ +S FV+ YS   S F+  + +T  +     +S    +++   S   + SR V  Y S
Sbjct: 606 SSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSS---TLSRFVVVYSS 662

Query: 566 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 676
           T+S R   + T TLS  + V  STLS   V YSS  S
Sbjct: 663 TLS-RFVVVYTSTLSRFVVVYTSTLSRFVVVYSSTLS 698


>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
          Length = 327

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 392 TNIISGFVLCYSFKQSCFMFPATCG-KRGKEAASRCWSWILTVPSLKTSASRVVKSYLST 568
           T ++  ++ C  FK    M  +       K   +   S++  VPS   +A  +VKSYL+ 
Sbjct: 15  TAMVKSYLNCVPFKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTA--MVKSYLNC 72

Query: 569 ISTRTCT 589
           + ++TCT
Sbjct: 73  VPSKTCT 79


>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 390 IFNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDFIN 241
           +FN +    +W D       S  A+KS+R  ES  Y  ++VH      +N
Sbjct: 18  LFNNLNDTPLWKDRSFATTFSYVANKSIRKQES--YGLIKVHKKTSKILN 65


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 311 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFK 433
           ++S    ++  +  +A  S+D+  L ITNIIS F+L  SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497


>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 169 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYST 294
           V+I+   +LL+T  Q    P++     + +A++DT  ++  T
Sbjct: 4   VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQT 45


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 487 IKMLVLDL-NCPIVEDEC--KSGRKKLLVDYFHTNLHTQNFYAFRFFICEVLNFINVVG 654
           ++ LV D+ +C +  + C   + RK+L VD+ H N H     A   ++ E +    ++G
Sbjct: 609 LQFLVSDIQSCAVTNNMCLNPAKRKELSVDFLHYNSHVCQTIATGGYVIERVKSFKLLG 667


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,878,830
Number of Sequences: 59808
Number of extensions: 568847
Number of successful extensions: 1541
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)