Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F12
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 33 0.34
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical ... 29 4.2
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 29 5.6
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 28 7.4
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 28 7.4
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 28 7.4
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 28 7.4
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 28 7.4
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 9.7
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 28 9.7
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 32.7 bits (71), Expect = 0.34
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 431 RIQSRNTSPIPSRRKYPMR-*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYL 607
R S++ SP P RR+ P + + P +PS K P R S +P +R+
Sbjct: 441 RSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSP 500
Query: 608 MKSRSTLTSLTKPKSKCPLPTPLRRKSLTK*KCP 709
+ RS +S +S+ P P P R + ++ + P
Sbjct: 501 RRRRSPSSS---SRSRSPPPPPRRPRQDSEQQAP 531
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 601 VPYEVKVHVDKPYEAKVKVPTPYTVEKKIPYEVKVPVPQP 720
+P + H KP+ + P P + K +P+ +P P+P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKP 256
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 604 PYEVKVHVDKPYEAKVKVPTPYTVEKKIPYEVKVPVPQP 720
P + H KP+ + P P + K +P+ +P P P
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMP 222
>AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical
protein Y48A6B.13 protein.
Length = 396
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 527 KFPLPSRNTSNTQYTYLNLTPLKRKYLMKSRSTLTSLTKPKSKCPLPTPLR 679
+ P + S+ + Y KRK L K ++TS P K P P P R
Sbjct: 278 QLPPSTLAASDISFGYEETPEDKRKRLQKESKSVTSPPPPTQKAPPPPPTR 328
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 601 VPYEVKVHVDKPYEAKVKVPTPYTVEKKIPYEVKVPVP 714
+P V V P V VP P + +P V VPVP
Sbjct: 7 IPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVP 44
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 634 PYEAKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVQFQ*N 756
P A V VP P +P + +P+P P V V Q N
Sbjct: 8 PIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSN 48
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 431 RIQSRNTSPIPSRRK-YPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYL 607
R ++R T+ SRR +P + + TP S N + + LTP R
Sbjct: 272 RDRTRRTNTTASRRSVFPNKPAAAAANTTPIAPPRRSASANKATAPTSVSKLTPKIRPIA 331
Query: 608 MKSRSTLTSLTKPKSKCPLPTP 673
+RS++ + K P P P
Sbjct: 332 TANRSSILRMNVVKPTVPAPAP 353
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 431 RIQSRNTSPIPSRRK-YPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYL 607
R ++R T+ SRR +P + + TP S N + + LTP R
Sbjct: 272 RDRTRRTNTTASRRSVFPNKPAAAAANTTPIAPPRRSASANKATAPTSVSKLTPKIRPIA 331
Query: 608 MKSRSTLTSLTKPKSKCPLPTP 673
+RS++ + K P P P
Sbjct: 332 TANRSSILRMNVVKPTVPAPAP 353
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +1
Query: 655 VPTPYTVEKKIPYEVKVPVPQPYTVEKKVQFQ*NTKXGAXPYEVXXKCXXSQVPXDRPYN 834
VP P V+ +P V VPVP P V + T P P RP
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVPTPVYQP------TYCAVPPCPAPAATPVYAQPAPRPMP 209
Query: 835 VXVPXP 852
V P P
Sbjct: 210 VYAPAP 215
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 431 RIQSRNTSPIPSRRK-YPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYL 607
R ++R T+ SRR +P + + TP S N + + LTP R
Sbjct: 272 RDRTRRTNTTASRRSVFPNKPAAAAANTTPIAPPRRSASANKATAPTSVSKLTPKIRPIA 331
Query: 608 MKSRSTLTSLTKPKSKCPLPTP 673
+RS++ + K P P P
Sbjct: 332 TANRSSILRMNVVKPTVPAPAP 353
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 431 RIQSRNTSPIPSRRK-YPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKYL 607
R ++R T+ SRR +P + + TP S N + + LTP R
Sbjct: 272 RDRTRRTNTTASRRSVFPNKPAAAAANTTPIAPPRRSASANKATAPTSVSKLTPKIRPIA 331
Query: 608 MKSRSTLTSLTKPKSKCPLPTP 673
+RS++ + K P P P
Sbjct: 332 TANRSSILRMNVVKPTVPAPAP 353
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 204 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 88
+ IAT ++S+I + ++ P+ +F C RC + G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 431 RIQSRNTSPIPSRRKYPMR*KCPYLSP-TPSKRKFPLPSRNTSNTQYTYLN 580
R Q + + +P+ + P K P+ +P P R+F + T N +Y LN
Sbjct: 221 RSQEKRKNQLPAVHEPPSFMKTPWFAPPAPEGREFNIVDDRTINEKYAGLN 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,630
Number of Sequences: 27780
Number of extensions: 297537
Number of successful extensions: 1114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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