Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F11
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 217 8e-57
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 217 8e-57
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 217 8e-57
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 217 8e-57
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 202 3e-52
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 202 3e-52
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 86 3e-17
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 86 3e-17
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.19
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.44
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.44
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 32 0.58
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.77
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 31 1.0
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 31 1.0
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 3.1
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 29 4.1
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 5.4
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 5.4
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 5.4
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 5.4
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 5.4
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 7.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 7.2
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 7.2
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 9.5
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 9.5
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 28 9.5
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 9.5
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 9.5
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 9.5
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 9.5
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 9.5
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 9.5
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 217 bits (530), Expect = 8e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +1
Query: 124 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 303
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 304 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 480
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 481 LFVGMILILIFAEVLGLYGLIVAIYL 558
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 217 bits (530), Expect = 8e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +1
Query: 124 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 303
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 304 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 480
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 481 LFVGMILILIFAEVLGLYGLIVAIYL 558
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 217 bits (530), Expect = 8e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +1
Query: 124 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 303
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 304 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 480
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 481 LFVGMILILIFAEVLGLYGLIVAIYL 558
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 217 bits (530), Expect = 8e-57
Identities = 108/146 (73%), Positives = 120/146 (82%), Gaps = 1/146 (0%)
Frame = +1
Query: 124 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 303
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 304 LVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 480
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTAQQPR
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 481 LFVGMILILIFAEVLGLYGLIVAIYL 558
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 202 bits (492), Expect = 3e-52
Identities = 96/147 (65%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 121 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 300
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 301 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 477
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 478 RLFVGMILILIFAEVLGLYGLIVAIYL 558
R+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 202 bits (492), Expect = 3e-52
Identities = 96/147 (65%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 121 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 300
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 301 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 477
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 478 RLFVGMILILIFAEVLGLYGLIVAIYL 558
R+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 86.2 bits (204), Expect = 3e-17
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Frame = +1
Query: 145 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 324
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 325 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 462
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 463 TAQQPRLFVGMILILIFAEVLGLYGLIVAI 552
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +1
Query: 376 HLGAGLAVGF----SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 543
H+ AGL +GF S L AG+ I G + + G + PR+ ++ +IF E + ++G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 544 VA 549
+A
Sbjct: 109 MA 110
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 86.2 bits (204), Expect = 3e-17
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Frame = +1
Query: 145 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 324
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 325 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 462
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 463 TAQQPRLFVGMILILIFAEVLGLYGLIVAI 552
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +1
Query: 376 HLGAGLAVGF----SGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 543
H+ AGL +GF S L AG+ I G + + G + PR+ ++ +IF E + ++G+I
Sbjct: 49 HMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGII 108
Query: 544 VA 549
+A
Sbjct: 109 MA 110
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 258 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 341
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 357 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 259
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 357 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 259
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 558 QVDGDDKSVKTQYFSENKNKNHSDE*PR---LLSSTTHACISHDAYGETGSQTRE 403
++DG++ K + K KNH+D P LL ST+ + ++ D + TR+
Sbjct: 511 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKRSSSSGTTRK 565
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +2
Query: 35 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 193
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 194 ELPSQE 211
++P +E
Sbjct: 343 KMPDRE 348
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 558 QVDGDDKSVKTQYFSENKNKNHSDE*PR---LLSSTTHACISHDAYGE 424
++DG++ K + K KNH+D P LL ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 558 QVDGDDKSVKTQYFSENKNKNHSDE*PR---LLSSTTHACISHDAYGE 424
++DG++ K + K KNH+D P LL ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -3
Query: 458 RTPASPTMPMAKPAARPENPTAKPAPK 378
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -3
Query: 458 RTPASPTMPMAKPAARPENPTAKPAPK 378
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 530 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKP 387
RP T A R+R P L PR P T A P +RP T +P
Sbjct: 82 RPATKAPNRMRRPPPRKLA--QTPRPPVVTTQRPAPPQSRPPPVTRRP 127
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 530 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKP 387
RP T A R+R P L PR P T A P +RP T +P
Sbjct: 82 RPATKAPNRMRRPPPRKLA--QTPRPPVVTTQRPAPPQSRPPPVTRRP 127
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 288 YCHLRSGRGCPDCWCPPGASQ 350
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 464 VPRTPASPTMPMAKPAARPENPTAKPAPK 378
VP P PT P +P RPE P +P P+
Sbjct: 96 VPPPPPPPTQPEPEPEPRPE-PQPEPQPE 123
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 270 CRHGGYYCHLRSGRGCPDCWCPPGASQ 350
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 288 YCHLRSGRGCPDCWCPPGASQ 350
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 288 YCHLRSGRGCPDCWCPPGASQ 350
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 417 SQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLR 241
S++R+ ++ T+ D+ P +K V E S+ DS + D R DDR D D R
Sbjct: 24 SRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGGRRDDRRDNRRDDRR 81
Query: 240 PH 235
H
Sbjct: 82 DH 83
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 461 PRTPASPTMPMAKPAARPENPTAKPAPK 378
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 461 PRTPASPTMPMAKPAARPENPTAKPAPK 378
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 238 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 363
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 291 CHLRSGR-GCPDCWCPPGASQLPP 359
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 461 PRTPASPTMPMAKPAARPENPTAKPAP 381
P P P P + AA PE+P P P
Sbjct: 187 PAGPPGPAGPAGEDAAAPESPPGPPGP 213
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 270 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 395
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 270 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 395
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Frame = -2
Query: 693 PNPMQGGPATGDDHPCAR-LQTQIMS-----IEARSTGDGSGVCSGRLFCVQVDGDDKSV 532
P+ G +T P + +QI+S I +S G SG CV +GD +S
Sbjct: 37 PSTSSGSSSTSSPRPSTPGILSQILSSASSPISPQSAGSSSGASDTMSLCVSDNGDHESD 96
Query: 531 KTQYFSE 511
K SE
Sbjct: 97 KLSVVSE 103
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 465 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 289
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 288 N 286
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 465 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 289
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 288 N 286
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 465 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 289
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 288 N 286
N
Sbjct: 669 N 669
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 461 PRTPASPTM--PMAKPAARPENPTAKPAPK 378
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 461 PRTPASPTM--PMAKPAARPENPTAKPAPK 378
PRTP +P + P +P A P A+P P+
Sbjct: 434 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 463
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 461 PRTPASPTM--PMAKPAARPENPTAKPAPK 378
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 461 PRTPASPTM--PMAKPAARPENPTAKPAPK 378
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,648,016
Number of Sequences: 27780
Number of extensions: 484605
Number of successful extensions: 1690
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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