Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F09
(839 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 318 2e-87
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 318 3e-87
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 315 3e-86
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 315 3e-86
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 315 3e-86
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 313 8e-86
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 312 2e-85
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 310 6e-85
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 309 1e-84
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 162 2e-40
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 162 2e-40
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 159 3e-39
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 159 3e-39
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 158 5e-39
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 158 5e-39
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 157 9e-39
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 134 9e-32
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 133 2e-31
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 29 3.8
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 28 8.9
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 8.9
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 318 bits (782), Expect = 2e-87
Identities = 149/211 (70%), Positives = 166/211 (78%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIG+KFWE + +EHGIDPTG Y G SDLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASC---- 56
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
G+YVPRAIL+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 57 --GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
AVLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 AVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 318 bits (781), Expect = 3e-87
Identities = 150/212 (70%), Positives = 167/212 (78%), Gaps = 1/212 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTS-DLQLERISVYYNEASVATA 223
M +H+Q GQCGNQIG+KFWE I +EHG+DPTG Y G S DLQLERI+VYYNEAS
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEAS---- 56
Query: 224 ESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 403
GG+YVPRA+L+DLEPGTMD++RSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+
Sbjct: 57 --GGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELI 114
Query: 404 DAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP 583
DAVLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSP
Sbjct: 115 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP 174
Query: 584 KVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
KVSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 KVSDTVVEPYNATLSVHQLVENADECMVLDNE 206
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 209 YDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFP 244
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 315 bits (773), Expect = 3e-86
Identities = 148/211 (70%), Positives = 164/211 (77%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIGAKFWE + EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASC---- 56
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
+VLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 315 bits (773), Expect = 3e-86
Identities = 148/211 (70%), Positives = 164/211 (77%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIGAKFWE + EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASC---- 56
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
+VLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 315 bits (773), Expect = 3e-86
Identities = 149/212 (70%), Positives = 167/212 (78%), Gaps = 1/212 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRG-TSDLQLERISVYYNEASVATA 223
M +H+Q GQCGNQIG+KFWE I +EHGID TG Y G T+DLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEAS---- 56
Query: 224 ESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 403
GG+YVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+
Sbjct: 57 --GGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELI 114
Query: 404 DAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP 583
DAVLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSP
Sbjct: 115 DAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP 174
Query: 584 KVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
KVSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 KVSDTVVEPYNATLSVHQLVENADECMVLDNE 206
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 209 YDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFP 244
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 313 bits (769), Expect = 8e-86
Identities = 146/211 (69%), Positives = 165/211 (78%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIGAKFWE + EHGID TG Y+G +DLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASC---- 56
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
G++VPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
+VLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 312 bits (766), Expect = 2e-85
Identities = 146/211 (69%), Positives = 165/211 (78%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIG+KFWE ++ EHGID TG Y G S+LQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASC---- 56
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
G+YVPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 57 --GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
+VLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ P++GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFP 243
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 310 bits (762), Expect = 6e-85
Identities = 147/211 (69%), Positives = 164/211 (77%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIGAKFWE I EHGID TG G +DLQLERI+VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEAS----- 55
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
GGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 56 -GGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
+VLDVVRKE ENCD LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ NPT+GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFP 243
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 309 bits (759), Expect = 1e-84
Identities = 147/211 (69%), Positives = 163/211 (77%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M +H+Q GQCGNQIGAKFWE I +EHGID TG Y G S LQLERI VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEAS----- 55
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
GGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 56 -GGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
+VLDVVRKE EN D LQGFQ KIREEYPDR+M T+SV PSPK
Sbjct: 115 SVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPK 174
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VSDTVVEPYNA LS+HQLVEN DE +DNE
Sbjct: 175 VSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLTCXG-DXXLRXP 791
YDIC+RTLK+ NPT+GDLNHL S T G LR P
Sbjct: 208 YDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFP 243
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 162 bits (394), Expect = 2e-40
Identities = 85/212 (40%), Positives = 119/212 (56%), Gaps = 1/212 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M + + GQ G Q+G WE EHGI P G+ SD + V ++ + +E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMM--PSDTT---VGVAHDAFNTFFSE 55
Query: 227 SG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 403
+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 56 TGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIV 115
Query: 404 DAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP 583
D LD VRK +NC LQGF ++ +Y + +++ PSP
Sbjct: 116 DLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSP 175
Query: 584 KVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
+VS VVEPYN+VLS H L+E+TD +DNE
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 207
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXS 755
YDIC R+L + PTY +LN L S
Sbjct: 210 YDICRRSLDIERPTYTNLNRLIS 232
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 162 bits (394), Expect = 2e-40
Identities = 85/212 (40%), Positives = 119/212 (56%), Gaps = 1/212 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M + + GQ G Q+G WE EHGI P G+ SD + V ++ + +E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMM--PSDTT---VGVAHDAFNTFFSE 55
Query: 227 SG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 403
+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+V
Sbjct: 56 TGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIV 115
Query: 404 DAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP 583
D LD VRK +NC LQGF ++ +Y + +++ PSP
Sbjct: 116 DLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSP 175
Query: 584 KVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
+VS VVEPYN+VLS H L+E+TD +DNE
Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE 207
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXS 755
YDIC R+L + PTY +LN L S
Sbjct: 210 YDICRRSLDIERPTYTNLNRLIS 232
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 159 bits (385), Expect = 3e-39
Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 2/213 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 220
M + + GQ G Q+G WE EHGI P G G + + + +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA-- 58
Query: 221 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 400
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 59 ----GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
Query: 401 VDAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 580
VD LD +RK +NC LQGF ++ +Y + ++V PS
Sbjct: 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174
Query: 581 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
P+VS +VVEPYN+VLS H L+E+TD + +DNE
Sbjct: 175 PQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNE 207
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXS 755
YDIC R+L + PTY +LN L S
Sbjct: 210 YDICRRSLNIERPTYTNLNRLVS 232
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 159 bits (385), Expect = 3e-39
Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 2/213 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 220
M + + GQ G Q+G WE EHGI P G G + + + +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA-- 58
Query: 221 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 400
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 59 ----GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
Query: 401 VDAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 580
VD LD +RK +NC LQGF ++ +Y + ++V PS
Sbjct: 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174
Query: 581 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
P+VS +VVEPYN+VLS H L+E+TD + +DNE
Sbjct: 175 PQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNE 207
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXS 755
YDIC R+L + PTY +LN L S
Sbjct: 210 YDICRRSLNIERPTYTNLNRLVS 232
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 158 bits (383), Expect = 5e-39
Identities = 84/211 (39%), Positives = 116/211 (54%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M + + GQ G Q+G WE EHGI P G + SD + +N T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETG- 57
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 58 -AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
LD +RK +NC LQGF ++ +Y + ++V PSP+
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VS +VVEPYN+VLS H L+E+TD + +DNE
Sbjct: 177 VSTSVVEPYNSVLSTHSLLEHTDVSILLDNE 207
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXS 755
YDIC R+L + PTY +LN L S
Sbjct: 210 YDICRRSLSIERPTYTNLNRLVS 232
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 158 bits (383), Expect = 5e-39
Identities = 84/211 (39%), Positives = 116/211 (54%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 226
M + + GQ G Q+G WE EHGI P G + SD + +N T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETG- 57
Query: 227 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 406
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 58 -AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
Query: 407 AVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 586
LD +RK +NC LQGF ++ +Y + ++V PSP+
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176
Query: 587 VSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
VS +VVEPYN+VLS H L+E+TD + +DNE
Sbjct: 177 VSTSVVEPYNSVLSTHSLLEHTDVSILLDNE 207
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXS 755
YDIC R+L + PTY +LN L S
Sbjct: 210 YDICRRSLSIERPTYTNLNRLVS 232
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (381), Expect = 9e-39
Identities = 80/213 (37%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Frame = +2
Query: 47 MXXXVHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 220
M + + GQ G Q+G WE EHGI P G S + + + +++E S
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETS--- 57
Query: 221 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 400
G++VPRA+ LDLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 ---SGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREI 114
Query: 401 VDAVLDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 580
VD L+ +RK +NC LQGF ++ ++ + +++ PS
Sbjct: 115 VDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPS 174
Query: 581 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 679
P+VS VVEPYN+VLS H L+E+TD +DNE
Sbjct: 175 PQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNE 207
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 687 YDICYRTLKVPNPTYGDLNHLXSLT 761
YDIC R+L + PTY +LN L S T
Sbjct: 210 YDICRRSLDIERPTYSNLNRLISQT 234
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 134 bits (323), Expect = 9e-32
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 3/209 (1%)
Frame = +2
Query: 59 VHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGK 238
+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 6 ITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA------DDQH 59
Query: 239 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAV 412
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G Y +G + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 413 LDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KV 589
+D++ +E + D L+GF + + Y +++ TYSV P+ +
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 590 SDTVVEPYNAVLSIHQLVENTDETYCIDN 676
SD VV+PYN++L++ +L N D +DN
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 133 bits (321), Expect = 2e-31
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 3/209 (1%)
Frame = +2
Query: 59 VHLQAGQCGNQIGAKFWEXISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGK 238
+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 6 ITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA------DDQH 59
Query: 239 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAV 412
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G Y +G + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 413 LDVVRKECENCDRLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KV 589
+D++ +E + D L+GF + + Y +++ TYSV P+ +
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 590 SDTVVEPYNAVLSIHQLVENTDETYCIDN 676
SD VV+PYN++L++ +L N D +DN
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 131 GIDPTGVYRGTSDLQLERISVYYNEASVATAES 229
GI P GV T D++ R SVY N+A A E+
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQACEAKYET 75
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 599 VVEPYNAVLSIHQLVENTDETYCIDNEXXLRYLLQ 703
V+ N +HQ V+ DE +C+D + +R LQ
Sbjct: 3 VLRVSNQSFKLHQQVQCKDEIFCLDQKVNVRRSLQ 37
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 143 TGVYRGTSDLQLERISVYYNEASVATAESGGK---YVPRAILLDLEPGTMDAVRSGAYGQ 313
TG+Y G I + ++ A+V + S G+ ++P A +D P V + AY
Sbjct: 401 TGIYSGKGSSSYHHIMLRHSTATVGSNSSSGQVTGFMPDAKGMDPVPVFQSEVENLAYPD 460
Query: 314 LFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCD 448
++ FG N ++ H + + D + D+ + C+
Sbjct: 461 K-HEESIAFGMVNLSNESSR-HESHESSFSDQLGDMDQDYTVECE 503
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,575
Number of Sequences: 28952
Number of extensions: 237718
Number of successful extensions: 728
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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