Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F08
(871 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_40538| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_31463| Best HMM Match : ABC2_membrane (HMM E-Value=3.1) 29 6.5
SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065) 29 6.5
>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = -3
Query: 620 LDFIRYFLFNGVRFRYVYWVF-------DVFLDGKGNFLFDGVGLRYGHFHLIGYFLLDG 462
L + YF GVR+R + W D D G + L YGH ++ Y LLDG
Sbjct: 724 LQRVSYFRNTGVRWRSLSWKLNSTFDWEDAIQDAMGTSMSLAKALYYGHVYVAQYPLLDG 783
Query: 461 I 459
I
Sbjct: 784 I 784
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 11 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 58
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 119 PIARRYPIARRYPIARGYPIARRYPIARRYPIARRYPIARRYPVARRY 166
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 23 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARGYPIARRY 70
>SB_40538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 76 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 123
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 82 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 129
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 190 PIARRYPIARRYPIARGYPIARRYPIARRYPIARRYPIARRYPIARRY 237
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 208 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 255
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 214 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 261
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 220 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 267
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 226 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 273
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 232 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 279
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 238 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 285
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 244 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRY 291
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 256 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPVARRYPIARRY 303
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 250 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPVARRY 297
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 463 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKRKY 606
P R+YP+ + P P R++P+ R +Y P+ R+Y
Sbjct: 94 PIARRYPIARRYPIARRYPIARRYPIARRYPIARRYPIARGYPIARRY 141
>SB_31463| Best HMM Match : ABC2_membrane (HMM E-Value=3.1)
Length = 268
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 147 PFCLVSSLRLPSVCLSPPWQRQPRPTMPPKITVYFIVVS 31
P L SSL PS+ SP P P PP T+ I+V+
Sbjct: 217 PLSLSSSLSSPSLS-SPSSASPPLPPPPPSSTIIIIIVA 254
>SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)
Length = 325
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 638 RLVNVDLDFIRYFLFN-GVRFRYVYWVFDVFLDGKGNFLFDGVGLRYGHFHL 486
RL+ +DL ++ F++ VR+ + VFD+F G F FD L+ G+ HL
Sbjct: 169 RLI-LDLSYLDKFIWKQSVRYEDIRTVFDLFQAGYYFFTFD---LKSGYHHL 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,145,574
Number of Sequences: 59808
Number of extensions: 332033
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -