Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F06
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   4.2  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   5.6  
U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protei...    28   7.4  
AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical...    28   7.4  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   9.8  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    28   9.8  

>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 600 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPXPLHC 728
           +P    V V  P    V VP P  +   +P  V VPVP   +C
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 600 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPXPL 722
           +P  +   V  P  V   VP P  +   +P  + VPVP P+
Sbjct: 5   IPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPV 45



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 633 PYEVKVKVPTPYTVEKKIPYEVKVPVPXPL 722
           P  + + +P P  V   +P  V VP+P P+
Sbjct: 2   PPPIPIPIPAPVPVPAPVPQPVPVPMPMPM 31



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 600 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPXPL 722
           +P  + + +  P  V   VP P  V   +P  + +P+P P+
Sbjct: 1   MPPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPV 41


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 603 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPXPLH 725
           P  +  H  KP+   +  P P  + K +P+   +P P P H
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKH 224



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 600 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPXP 719
           +P  +  H  KP+   +  P P  + K +P+   +P P P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKP 256


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 633 PYEVKVKVPTPYTVEKKIPYEVKVPVPXP 719
           P  V   VP P  V+  +P  V VPVP P
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVP 177


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -2

Query: 201 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSPND 22
           S H     Y   +  C  CP  +    R+P  C +P     P P  PP  PC + + P  
Sbjct: 12  SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP-- 66

Query: 21  AEDLCP 4
              +CP
Sbjct: 67  PPPICP 72


>U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protein
           1, isoform c protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 99  SPPWQRQPRPTMPPK*PCTSLWSPNDAEDLCPV 1
           SP  QRQP P +PPK P  S   P+    +C +
Sbjct: 37  SPRLQRQPPPPLPPKPP--SQCPPSPMSQVCVI 67


>AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 252

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 707 GHFHFVRDFLLNGVGSGHFDFDFVR 633
           GH    ++ L  G G+GH+ FDF+R
Sbjct: 32  GHILVGKEVLDVGCGNGHYSFDFLR 56


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 206 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 48
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N     H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 203 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 87
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 430 RIQSRNTSPIPSRRKYPMR*KCPYLSP-TPSKRKFPLPSRNTSNTQYTYLN 579
           R Q +  + +P+  + P   K P+ +P  P  R+F +    T N +Y  LN
Sbjct: 221 RSQEKRKNQLPAVHEPPSFMKTPWFAPPAPEGREFNIVDDRTINEKYAGLN 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,341
Number of Sequences: 27780
Number of extensions: 299188
Number of successful extensions: 1071
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)