Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F05
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 31 1.2
08_02_1319 + 26117353-26117784 29 4.8
07_03_0579 + 19649978-19650442 29 4.8
07_03_0568 - 19593265-19593729 29 4.8
01_04_0082 + 15835137-15836312 29 4.8
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 8.4
05_03_0039 - 7621613-7622695 28 8.4
01_02_0007 + 10132380-10133201 28 8.4
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.4
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.1 bits (67), Expect = 1.2
Identities = 43/169 (25%), Positives = 55/169 (32%), Gaps = 2/169 (1%)
Frame = +3
Query: 357 PVEKKTPYPVKVLVPQPYPXCQTCPL--PS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 530
P K P P P PY T P P + + T T PS K P+ P+ +
Sbjct: 176 PSYKPQPKPT----PTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYK 231
Query: 531 TRPRQGICARTLPRLKRKFMFQSKCTCPLLTQXRKRYLTPLKVPYMCLLLTPXYKEVQVP 710
+P+ P + Q K P + + + P PY P YK P
Sbjct: 232 PQPKPNPPPTYKPA-PPTYKPQPKPNPPPTYKPQPK---PTPTPYT----PPTYKPQPKP 283
Query: 711 XXGPCGQTPTXCISXNXCLXPFEKPRPIPXXKNXXPYPX*SXX*PXXCP 857
P TPT + P KP P P P P S P P
Sbjct: 284 TPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTP 332
>08_02_1319 + 26117353-26117784
Length = 143
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 417 CQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTL 566
C PL D +GTS L ++ + P TCP++ RP +RT+
Sbjct: 76 CTGKPLEMLLD-RGTSKPDKYLKAKSDSVRPRTCPAKSGRPPGASSSRTV 124
>07_03_0579 + 19649978-19650442
Length = 154
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 444 RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 590
RD + R A + +G P+ P+ PR ++LPRLK + +
Sbjct: 91 RDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>07_03_0568 - 19593265-19593729
Length = 154
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 444 RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 590
RD + R A + +G P+ P+ PR ++LPRLK + +
Sbjct: 91 RDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>01_04_0082 + 15835137-15836312
Length = 391
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -3
Query: 760 WFXDMHXVGVCPHGPXXGTCTSLYXGVRSR--HMYGTFNGVRYLFLYWVRSGHVHFDWNM 587
W D+ G P P C + Y G +S H G R L L W R G+ H DWN+
Sbjct: 242 WIFDLP--GYKPTSPMVD-CLTGYLGHKSGVLHYVQPDTGGRTL-LVWARDGYPHGDWNL 297
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 317 SSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSN 424
+S S P+RK PGRK P P S + P N
Sbjct: 7 ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAEN 42
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 348 IPYPVEKKTPYPVKVLVPQPYPXCQTCPLP 437
IP+P K P P L P+P+P + P+P
Sbjct: 279 IPHPGPKPKPKPDPKLEPKPHPEPKPHPMP 308
>01_02_0007 + 10132380-10133201
Length = 273
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/73 (28%), Positives = 28/73 (38%)
Frame = +3
Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 530
P P + P P +PQP P Q PLP + + P+ LP P+ Q
Sbjct: 72 PLPQPQPQPQPQPQPLPQPQPQPQPLPLPGPQPL----PQPGPQPNPNPQPLPQPNPNPQ 127
Query: 531 TRPRQGICARTLP 569
P+ A LP
Sbjct: 128 PLPQPDPNAPPLP 140
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.4
Identities = 28/77 (36%), Positives = 35/77 (45%)
Frame = +2
Query: 320 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 499
SRS PRR A P GR +P P S RSP PR S S + R+P +RR
Sbjct: 226 SRS-PRRSASPPNGRNRSPTPNAS-RSPA-PRDSR---------SPMRADSRSPADHERR 273
Query: 500 CLTQYMSQSTDPSPSRY 550
++ + PSP Y
Sbjct: 274 DMST-AANGRSPSPRDY 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,743
Number of Sequences: 37544
Number of extensions: 367071
Number of successful extensions: 1325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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