Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F05
(867 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 31 1.6
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 30 2.8
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_34495| Best HMM Match : Ets (HMM E-Value=0) 29 3.7
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 29 4.9
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9) 29 4.9
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 29 4.9
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 29 4.9
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 29 6.5
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11) 29 6.5
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 28 8.6
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 320 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 442
S +PRR L +E P PR+S RS +LP L+N+ L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 411
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 329 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 442
+PRR L +E P PR+S RS +LP L+N+ L
Sbjct: 1 MPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 36
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 308 R*ESSRSLPRRKAHP-LPGRKE-NPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNP 481
R + +++ +R +HP +P ++ NP + S P+++NMS+ + S +
Sbjct: 484 RMNAQQNMSQRLSHPSIPEQQAYNPYGNQQVMSQAPPQVNNMSMQNMPAYSSSGYPNMRG 543
Query: 482 TQSKRRCLTQYMSQSTDPSPSRYMCQ 559
Q +R+ MSQ P+ +Y Q
Sbjct: 544 NQFQRQLSMPVMSQGY-PNQEQYAQQ 568
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = +2
Query: 359 GRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 502
G LPR RS +LP LS S SR Q T R P S C
Sbjct: 675 GTSNKQLPRPHRRSTSLPSLSPDSSRDSDYQSRAQSTVRAPHPSPSAC 722
>SB_34495| Best HMM Match : Ets (HMM E-Value=0)
Length = 476
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 381 PVKVLVPQPYPXCQTCPLPS*RD--CQGTSSRTATLPSRKEGALPSTCPS 524
P L PQP P P +D C G S A PS G +PS CPS
Sbjct: 121 PSYQLAPQPQPPQTYHIKPEVQDFSCMGLSHSPA--PSSDSGMVPSPCPS 168
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 329 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 451
LP K P+P E P+ R+PT+ R ++M LT + L
Sbjct: 652 LPESKPAPIPVIPEAPVFDPKPRTPTVSRKTSMKLTAEEHL 692
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/112 (25%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Frame = +3
Query: 453 QGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFMFQSKCTCPLLTQXR 632
QGT R L TCP+ P G L R + C P
Sbjct: 808 QGTRHRLIALDIMTSIVTLGTCPT----PCYGPVPHPLLRPCAPPPATALCPTPCYGPVP 863
Query: 633 KRYLTPLKVPYMCLLL-TPXYKEVQVPXXGPCGQTPTXCISXNXCLXPFEKP 785
L P P L TP Y V P PC P + C P P
Sbjct: 864 HHLLRPCAPPPATALCPTPCYGPVPHPLLRPCAPPPATALCPTPCYGPVPHP 915
Score = 28.7 bits (61), Expect = 6.5
Identities = 35/136 (25%), Positives = 41/136 (30%), Gaps = 2/136 (1%)
Frame = +3
Query: 375 PYPVKVLVP-QPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGI 551
P P +L P P P CP P C G P A + CP+ P G
Sbjct: 836 PVPHPLLRPCAPPPATALCPTP----CYGPVPHHLLRPCAPPPAT-ALCPT----PCYGP 886
Query: 552 CARTLPRLKRKFMFQSKCTCPLLTQXRKRYLTPLKVPYMCLLL-TPXYKEVQVPXXGPCG 728
L R + C P L P P L TP Y V P PC
Sbjct: 887 VPHPLLRPCAPPPATALCPTPCYGPVPHPLLRPCAPPPATALCPTPCYGPVPHPLLRPCA 946
Query: 729 QTPTXCISXNXCLXPF 776
P + C P+
Sbjct: 947 PPPATALCPTPCYGPY 962
>SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)
Length = 356
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 348 IPYPVEKKTPYPVKVLVPQPYP 413
IPYPV+ P KVL PYP
Sbjct: 26 IPYPVKAPAPGTCKVLTSPPYP 47
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 284 GGPQNRNCR*ESSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLS 421
GG R R S +PRR ++ P PR++A S +LP L+
Sbjct: 1392 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLT 1437
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 284 GGPQNRNCR*ESSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLS 421
GG R R S +PRR ++ P PR++A S +LP L+
Sbjct: 263 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLT 308
>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 405 PYPXCQTCPLPS*RDCQGTSSRTATLPSR 491
P P C +CPLP CQ + PSR
Sbjct: 482 PPPGCASCPLPGCASCQPPGCASCPGPSR 510
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 414 RGRVGERALSRGRGFSFLPGRGCAFRRGR 328
+GR+G R RGRG + PGRG RGR
Sbjct: 89 QGRLGARG--RGRGMARGPGRGMVGARGR 115
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 368 ENPLPRESARSPTLPRLSNMSLTQLK 445
++P+P ESARS PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195
>SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)
Length = 123
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +1
Query: 622 PSXEKGTLPR*RSRTCACSLPRYTKRYKYXXXVHVDRPLPXAYPXTXAXPRSRNPVPYPG 801
P +K LP + C + P YT ++ + + P A P S NP YP
Sbjct: 8 PGCKKFCLPSCKRSCCLPNAPNYTPG-QFPELMQYQASMTAPPPLPQACPPSCNPTCYPS 66
Query: 802 XKTXC 816
C
Sbjct: 67 CDAGC 71
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = +3
Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTS----SRTATLPS 488
P P +KK P K+L P P P PS D S T T+PS
Sbjct: 277 PTPAQKKPYIPTKILQATPTPTATIAPPPSRVDASTVSIPTVRPTVTVPS 326
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 351 PYPVEKKTPY--PVKVLVPQPYPXCQTCPLP 437
P+P E++TP P + VP P+P + P P
Sbjct: 1466 PFPAERRTPAPDPAERRVPPPFPAERRTPAP 1496
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 28.3 bits (60), Expect = 8.6
Identities = 27/104 (25%), Positives = 39/104 (37%)
Frame = +3
Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 530
P + KTP PV + P P T P +S +L S+ G + S +
Sbjct: 1055 PVSLTSKTPGPVSLTSKTPSPVSLTSKTPGPVSLSSKTSGPVSLTSKTPGPV-SLTTKQS 1113
Query: 531 TRPRQGICARTLPRLKRKFMFQSKCTCPLLTQXRKRYLTPLKVP 662
T+P R +R S + P Q R R +P +VP
Sbjct: 1114 TKPEAKKHKRRSSTPERSDSDSSVSSGPSKKQRRGRE-SPTEVP 1156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,481,416
Number of Sequences: 59808
Number of extensions: 400649
Number of successful extensions: 1326
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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