Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F05
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.61 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   3.3  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.3  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   3.3  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    29   3.3  
U10401-2|AAA19057.2|  386|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    28   9.9  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 320 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 448
           S S PRR+    P ++    PR + RSP+ PR   +S + ++R
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
 Frame = +2

Query: 326 SLPRRKAHPL-------PGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPT 484
           S P+RK  P+       P R+ +  PR+ +RSP      + S  + +R+S      R+P 
Sbjct: 75  SPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRIS------RSPV 128

Query: 485 QSKRRCLTQYMSQSTDPSPSR 547
           +  R    + +S+S  P P R
Sbjct: 129 RRSRSPPRRQVSRSRSPPPRR 149


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 5/124 (4%)
 Frame = +3

Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPS----RKEGALPSTC 518
           P P  K  P+P  +L P+P P  +  P P          +    P      K   +P   
Sbjct: 186 PMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPM 245

Query: 519 PSRQTRPRQGICARTLPRLKRKFMFQSK-CTCPLLTQXRKRYLTPLKVPYMCLLLTPXYK 695
           P  +  P+     + +P+ K K   + K    P      K    P K P   L   P  K
Sbjct: 246 PFPKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLKPKTKPKKNPVPILKPIPPKK 305

Query: 696 EVQV 707
           E  +
Sbjct: 306 ETYI 309



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 33/150 (22%), Positives = 48/150 (32%), Gaps = 1/150 (0%)
 Frame = +3

Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 530
           P P  K  P+P  +L P+P P  +  P P              +P  K  + P   P   
Sbjct: 50  PMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPF 109

Query: 531 TRPRQGICARTLPRLKRKFMFQSKCTCPLLTQXRKRYLTPLKVPYMCLLLTPXYKEVQVP 710
            +P+     +  P   +  +F      P      K  L P  +P+   +  P  K    P
Sbjct: 110 PKPKPMPKHKPKP-FPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPM--PKSKPKSEP 166

Query: 711 XXGPCG-QTPTXCISXNXCLXPFEKPRPIP 797
              P     P           P  KP+P P
Sbjct: 167 FPNPMPFPKPMPKPKPKPKPMPKHKPKPFP 196



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 4/162 (2%)
 Frame = +3

Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 530
           P P  K  P P+    P+P+P     P P  +       +    P      +P   P  +
Sbjct: 40  PMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPK----PMPFPKPMPK 95

Query: 531 TRPRQGICARTLPRLKRKFMFQSK---CTCPLLTQXRKRYLTPLKVPYMCLLLTPXYKEV 701
           ++P+       +P  K K M + K      P+L         P+  P   L   P     
Sbjct: 96  SKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPK 155

Query: 702 QVPXXGPCGQT-PTXCISXNXCLXPFEKPRPIPXXKNXXPYP 824
            +P   P  +  P           P  KP+P+P  K   P+P
Sbjct: 156 PMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMPKHK-PKPFP 196


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = +3

Query: 357 PVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTR 536
           PV +  P P     PQ Y   Q  P+       G S      P +  GA+P   P     
Sbjct: 478 PVGRYAPMPPPYGAPQDYHPQQGPPMVQMMQQPGPSGYYPQRPGQPTGAVPGPGPQGYMN 537

Query: 537 PRQGI 551
           P+ G+
Sbjct: 538 PQMGM 542


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLP 437
           P P+    P PV   VPQP P     P+P
Sbjct: 4   PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 348 IPYPVEKKTPYPVKVLVPQPYPXCQTCPLP 437
           IP PV    P P  V VP P P     P+P
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLP 437
           P PV    P PV V +P P P     P+P
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 348 IPYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDC 452
           +P PV +  P P+ + +P P P     P+P   +C
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +3

Query: 717 GPCGQTPTX-CISXNXCLXPFEKPRPIPXXKNXXPYPX*SXX*PXXCP 857
           G CG  PT  C     C  P   P P+P      P P      P  CP
Sbjct: 25  GGCGGCPTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICP 72


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +2

Query: 335 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 502
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R  ++S RR 
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210

Query: 503 LTQYMSQSTDPSPSR 547
                  +  PS SR
Sbjct: 211 REDPRKVARKPSRSR 225


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +2

Query: 335 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 502
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R  ++S RR 
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210

Query: 503 LTQYMSQSTDPSPSR 547
                  +  PS SR
Sbjct: 211 REDPRKVARKPSRSR 225


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 38/152 (25%), Positives = 49/152 (32%)
 Frame = +3

Query: 351 PYPVEKKTPYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 530
           P P  K  P P     P P P  +  P P  +       +    P  K    P+  P  +
Sbjct: 181 PDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPE 240

Query: 531 TRPRQGICARTLPRLKRKFMFQSKCTCPLLTQXRKRYLTPLKVPYMCLLLTPXYKEVQVP 710
            +P+     +  P+ K K   + K   P L    K    P   P   L   P +K    P
Sbjct: 241 PKPKPKPKPKPEPKPKTKLKSEPK-PKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRP 299

Query: 711 XXGPCGQTPTXCISXNXCLXPFEKPRPIPXXK 806
              P    P      N    P  KPRP P  K
Sbjct: 300 KPNP-RPKPKPRSKPN----PKPKPRPKPELK 326


>U10401-2|AAA19057.2|  386|Caenorhabditis elegans Hypothetical
           protein T20B12.4 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 706 TCTSLYXGVRSRHMYGTFNGVRYLFLYWVRSGHVHFDWNMNFLFKRGKV 560
           T T  +  +  R  +  F+G R+  ++W     VH  W   F FK+  V
Sbjct: 87  TSTKDFENIVVRVKFSQFSGYRFEVVFWQVEEDVHIRWFKYFGFKQKSV 135


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 348 IPYPVEKKTPYPVKVLVPQPYP 413
           +P PV  + P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,756
Number of Sequences: 27780
Number of extensions: 277605
Number of successful extensions: 988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)