Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F05
(867 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.43
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.43
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t... 31 1.00
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 31 1.00
At5g66850.1 68418.m08428 protein kinase family protein contains ... 30 1.7
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 1.7
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.0
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 29 4.0
At5g15510.1 68418.m01816 expressed protein 29 5.3
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 29 5.3
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 29 5.3
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ... 28 7.0
At3g01015.1 68416.m00001 expressed protein ; expression supporte... 28 9.3
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +2
Query: 323 RSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 502
R P R+ PLP R+ +P PR P + S + ++R R + + +P + +
Sbjct: 292 RGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPA 351
Query: 503 LTQYMSQSTDPSPS 544
+ S S SPS
Sbjct: 352 GRRGRSSSYSSSPS 365
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +2
Query: 323 RSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 502
R P R+ PLP R+ +P PR P + S + ++R R + + +P + +
Sbjct: 299 RGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPA 358
Query: 503 LTQYMSQSTDPSPS 544
+ S S SPS
Sbjct: 359 GRRGRSSSYSSSPS 372
>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 161
Score = 31.1 bits (67), Expect = 1.00
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +3
Query: 375 PYPVKVLVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGIC 554
P P VP P P CP P + R T P R G+ ++CP + G+C
Sbjct: 32 PSPKPKPVPSPKPKPVQCPPPPRPSVPSPNPRPVT-PPRTPGSSGNSCPIDAL--KLGVC 88
Query: 555 ARTLPRL 575
A L L
Sbjct: 89 ANVLSSL 95
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 392 ARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQN 562
A+SP+ + + S TQ + S+ Q ++ +QS+ + +Q SQS SPS+ Q+
Sbjct: 762 AQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQS 818
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 290 PQNRNCR*ESSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLS 421
PQ R+ R + P R + PL + PR+S SP PRLS
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLS 296
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 383 RESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSR 547
R +RS + R S ++ + LSR + ++ ++S RR L++ +S+S PSP +
Sbjct: 212 RSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDK 266
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 320 SRSLPRRKAHPL-PGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKR 496
SRS RR P GR+++P P RSP+ P S + R R +P +
Sbjct: 285 SRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSP----SPPARRH 340
Query: 497 RCLTQYMSQSTDPSP 541
R T Q PSP
Sbjct: 341 RSPTPPARQRRSPSP 355
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 348 IPYPVEKKTPYPVKVLVPQPYPXCQTCP-LPS*RDCQGTSSRTATLPSRKEGALP 509
IPYP E +P P +++ P P L G S+ T ++PS G LP
Sbjct: 191 IPYPPESSSPNPPEIVPSPPESGYTPGPVLGPPYSEPGPSTPTGSIPSPSSGFLP 245
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 341 KAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 451
KA P+P +PR S++ PT PR + Q K++
Sbjct: 438 KAQPMPYFDRPFIPRRSSKHPTAPRDPKFHIPQHKKI 474
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 323 RSLPRRKAHPLPGRKENPLPRESARSPTLP 412
+ +P K P+P K P+P S SP++P
Sbjct: 37 KPVPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 673 CSLPRYTKRYKYXXXVHVDRPLPXAYPXTXAXPRSRNPVPYPGXKTXCPT 822
CS T + K+ + P+P A P+ + P P P +T PT
Sbjct: 129 CSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPT 178
>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
plastid heme oxygenase (HY1) [Arabidopsis thaliana]
GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
GI:4530591 GB:AF132475; annotation updated per Seth J.
Davis at University of Wisconsin-Madison
Length = 282
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 410 PRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 544
P S++S+ + +LSR+QF+ +P R Q +S + + SPS
Sbjct: 6 PISSSLSIFKNPQLSRFQFSSSSPNPLFLRPRIQILSMTMNKSPS 50
>At3g01015.1 68416.m00001 expressed protein ; expression supported
by MPSS
Length = 488
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 341 KAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 451
KA P+P +P+ S + PT+PR ++ Q K++
Sbjct: 428 KAQPMPYFDRPFIPKRSNKHPTVPRDPKFNIPQHKKI 464
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,072,147
Number of Sequences: 28952
Number of extensions: 268681
Number of successful extensions: 845
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -