Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F04
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    26   6.1  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.1  

>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 26/116 (22%), Positives = 44/116 (37%)
 Frame = +1

Query: 154 DEVYKINNRGQVVFGLVLENYEANSSDQESDIETPIQKGEIRVVWHPSGTERVISEKSVG 333
           +E   + N G +V   V       ++   S ++    K E + V H        +EK+  
Sbjct: 49  EETAVLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRA--TEKNKV 106

Query: 334 LADRSLMPGDVVRRLIAGKDTQRGYCRDIVMTAALQIVGTKHVIPSVASERLQPLE 501
               S  PGD+VR L+        Y     +T A   +G      S   E++ P++
Sbjct: 107 KVQNSFRPGDIVRALVISLGDGSSY----FLTTARNDLGVIFAQSSETGEQMFPVD 158


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 327 RFLRYN-AFCAGRMPYNTNFSFLYRCFNVAL 238
           R+L Y+ + C  +MP   + +F+  CFN++L
Sbjct: 39  RYLGYSKSMCHEKMPIFMDIAFIEYCFNLSL 69


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 485  LSLATLGITCFVPTICKAAVITMSRQYPLWVSLPAM 378
            L + TL + C +P  C+++     R   LW  + A+
Sbjct: 922  LKVGTLAVICTIPAFCRSSAGWYYRNRGLWAVILAI 957


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,663,982
Number of Sequences: 5004
Number of extensions: 81365
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)