Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F04
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9865| Best HMM Match : DUF1392 (HMM E-Value=7.4)                    89   3e-18
SB_6213| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.70 
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)                29   6.6  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                28   8.7  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_9865| Best HMM Match : DUF1392 (HMM E-Value=7.4)
          Length = 157

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 43/124 (34%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
 Frame = +1

Query: 148 YEDEVYKINNRGQVVFGLVLENYEANSSDQESDIETPIQKGEIRVVWHPSGTERVISEKS 327
           Y +++ K N+ G +  GLVL++ EA+S D+    +  ++KG+I V W+PSG E  +S   
Sbjct: 9   YAEDIVK-NSHGNL--GLVLQDAEASSEDESDSEDEALKKGQIVVCWYPSGQEETVSISK 65

Query: 328 VGLADRSLMPGDVVRRLIAGKD-TQRGYCRDIVMTAALQIVGTKHVIPSVASERLQPLEE 504
           + LADRSL+PGDVV+     +   Q+G+  D+ + A+++++    V+ ++    L PL+E
Sbjct: 66  IQLADRSLLPGDVVKHADQSRPIKQKGFISDVEVIASVKVIAANQVVTNIDCRELSPLQE 125

Query: 505 FSPG 516
              G
Sbjct: 126 LVQG 129


>SB_6213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 624 VLGLNTP-RRDPSEDTKRSLLWTALEVPTHESRQTAKSRG 508
           +LG NTP +RD  E  K +  ++ + +P+HES++   + G
Sbjct: 119 LLGYNTPLKRDSYESPKLTKKFSKISIPSHESKERQMATG 158


>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
          Length = 324

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 739 IPKNPRGPRKPLVPXIIFRRRV 674
           +PK P+ P KPL+P + + R+V
Sbjct: 21  VPKPPKPPEKPLMPYMRYSRKV 42


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 534 SRQTAKSRGKFFKRLKSFTCYTGDHVFRAHDLQG--GRHYNVAAISPLGI 391
           +R+    +GK  KRL    C  GDHV +A  LQ   G+   +  ++  G+
Sbjct: 552 TRKQGHGKGKSNKRLAGAWCSGGDHVDKAQFLQVDLGKRSRICGVATQGM 601


>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 477 CYTGDHVFRAHDLQGGRHYNVAAISPLGILASDEATNHITWHK 349
           CY     FR     G   +N+  I  +GILA  +  N   WH+
Sbjct: 391 CYKETGKFRIKIETGEERFNILKILIVGILARGDNCNEEGWHQ 433


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 463 IPSVASERLQPLEEFSPGFSSLS*FMG 543
           +PS+AS +  P+ EF+ GFS++  F G
Sbjct: 793 LPSLASSKPGPMYEFTQGFSNIWNFSG 819


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 316  SEKSVGLADRSLMPGDVVRRLIAGKDTQRGYCRDIVMTAAL 438
            +E+S  L D  L  GD++ RL    D  +  C+++V T  +
Sbjct: 1075 TEESNRLRDEVLEKGDIINRLTKTLDDTQRQCQELVRTGTV 1115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,278,236
Number of Sequences: 59808
Number of extensions: 642385
Number of successful extensions: 1836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)