Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F04
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi...    31   1.3  
At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4)...    31   1.3  
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ...    29   4.1  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    28   7.1  
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera...    28   7.1  
At4g12560.1 68417.m01982 F-box family protein contains F-box dom...    28   7.1  
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase...    28   7.1  

>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 709

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 611 FRPXTRALSRTTPCDVDAPRPYSSSEYY-PWN 703
           F+P   A S TT   + +P P SSS Y+  WN
Sbjct: 31  FQPPISAFSATTSASLPSPSPSSSSSYFSSWN 62


>At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam profile
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 403

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 347 DLSARPTD-FSDITRSVPEGCHTTRISPFC 261
           DL+  P D F D+   VPEGC  T +S  C
Sbjct: 110 DLNPIPDDDFRDLVEQVPEGCQITIVSDSC 139


>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
           identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
           thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
           PF00096: Zinc finger, C2H2 type
          Length = 267

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 588 EDTKRSLLWTALEVPTHESRQTAKSRGKFFKRLKSFTCYTGDHVFRAHDLQGG-RHYNVA 412
           ED   SL+  + +    E  ++ + R K  KR K F C T + VF+++   GG R  +  
Sbjct: 126 EDVALSLMLLSRDKWEKEEEESDEERWKK-KRNKWFECETCEKVFKSYQALGGHRASHKK 184

Query: 411 AISPLGILASDE 376
            I+    L SDE
Sbjct: 185 KIAETDQLGSDE 196


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 627 RVLGLNTPRRDPSEDTKRSLLWTALEVPTHESRQTAKSRGKFFKRL 490
           R+L +   R+  +ED   +L W A      E R   K R +   R+
Sbjct: 181 RILKMREERKKKAEDASDALSWVARSRKIEEKRNAEKQRAQQLSRI 226


>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -2

Query: 437 KAAVITMSRQYPLWVSLPAMRRRTTSPGIRDLSARPTDFSDITRSVPEGCHTT 279
           K+ ++T      L+   P       +PG+ D++ +  +F      +P+GC  T
Sbjct: 39  KSTILTTPLNAKLFFEKPIKSFNQDNPGLEDITIQILNFPCTELGLPDGCENT 91


>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 413

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 581 VSSDGSRLGVFRPXTRALSRTTPCDVDAPRPYSSSEY 691
           +S+  + L VF P TR + R  P  +D P   S+  Y
Sbjct: 101 LSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGY 137


>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase (PG1) GI:5669846,
           (PG2) GI:5669848 [Glycine max]; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 470

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +2

Query: 560 VHSKLRLVSSDGSRLGV--FRPXTRALSRTTPCDVDAPRPYSSSEYYPWNKWFTGA--SW 727
           V + +  VS +G +  V   +P  R  S+ TP    AP PY S+    +N +  GA    
Sbjct: 19  VAAAISTVSVEGRKHHVKKIKPKHRRHSKNTPTGSPAPAPYPSTNEGVFNIFSYGAKGDG 78

Query: 728 VLWDNRQLVG 757
           V  D++ LVG
Sbjct: 79  VSDDSKALVG 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,553,422
Number of Sequences: 28952
Number of extensions: 441137
Number of successful extensions: 1114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)