Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F01
         (826 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)                   34   0.12 
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          31   1.5  
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  29   3.5  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  29   4.6  
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)                 29   6.1  
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    29   6.1  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             28   8.0  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     28   8.0  
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)
          Length = 306

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 547 YMCXNLTPLKRKFMFQSK-CTCPLLTSXEKVLYPVKVPYMCLLLT 678
           Y C  LTP+K    F S  C C  LT  ++V++ V   Y C  LT
Sbjct: 12  YECKYLTPMKEVVFFVSYGCECKYLTPMKEVVFFVSYGYECKYLT 56


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 319 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 441
           S  +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 411



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 328 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 441
           +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 1   MPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 36


>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 380 PVKVHVP-QPYPVCQTCPLPS*RDCQ-GTSSRTATLPSRKEGALPSTCP 520
           P++ ++P  P+P+CQT PL    + +  T S     P    G+ P + P
Sbjct: 108 PIRDNLPLAPHPMCQTLPLQDNTESKLKTESEPTRSPQSDSGSTPPSSP 156


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = +1

Query: 358 GRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 501
           G     LPR   RS +LP LS  S       SR Q T R P  S   C
Sbjct: 675 GTSNKQLPRPHRRSTSLPSLSPDSSRDSDYQSRAQSTVRAPHPSPSAC 722


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 307 R*ESSRSLPRRKAHP-LPGRKE-NPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNP 480
           R  + +++ +R +HP +P ++  NP   +   S   P+++NMS+  +   S   +     
Sbjct: 484 RMNAQQNMSQRLSHPSIPEQQAYNPYGNQQVMSQAPPQVNNMSMQNMPAYSSSGYPNMRG 543

Query: 481 TQSKRRCLTQYMSQSTDPSPSRY 549
            Q +R+     MSQ   P+  +Y
Sbjct: 544 NQFQRQLSMPVMSQGY-PNQEQY 565


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 328 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 450
           LP  K  P+P   E P+     R+PT+ R ++M LT  + L
Sbjct: 652 LPESKPAPIPVIPEAPVFDPKPRTPTVSRKTSMKLTAEEHL 692


>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 221

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 413 RGRVGERALSRGRGFSFLPGRGCAFRRGR 327
           +GR+G R   RGRG +  PGRG    RGR
Sbjct: 89  QGRLGARG--RGRGMARGPGRGMVGARGR 115


>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 380 PVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPR 541
           P+   +        T  +P  +D Q  +S TAT+P       P T  S  T PR
Sbjct: 715 PIATDIQASRKASSTATIPGSKDSQPATS-TATIPRATNTQAPKTASSANTIPR 767


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 367 ENPLPRESARSPTLPRLSNMSLTQLK 444
           ++P+P ESARS   PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195


>SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 353 YPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRT--ATLPSRKEGALPSTCP 520
           YPV     YPV +    P  + QTCP+   + C  T  +T   TL      AL  T P
Sbjct: 235 YPVALGQTYPVALGQTYPVVLGQTCPVTLGQTCPVTLGQTCPVTLGQTYPVALGQTYP 292


>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 466 TYRNPTQSKRRCLTQYMSQSTDPSPSRYMCXNLTPLKRKFMFQSKCTC 609
           T R  +QS+R C +   S S  P+P+R     L P+  + + + K TC
Sbjct: 307 TIRRQSQSRRNCYSVISSNSPSPAPNR----RLLPINEEALIE-KETC 349


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 350 PY-PVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           PY P+  ++PYP     P P+P     P P
Sbjct: 121 PYSPIPPQVPYPGAAGPPMPHPTASVYPPP 150


>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 404 PYPVCQTCPLPS*RDCQGTSSRTATLPSR 490
           P P C +CPLP    CQ     +   PSR
Sbjct: 482 PPPGCASCPLPGCASCQPPGCASCPGPSR 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,581
Number of Sequences: 59808
Number of extensions: 329678
Number of successful extensions: 1303
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)