Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F01
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.57 
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.1  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   3.1  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.1  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 319 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 447
           S S PRR+    P ++    PR + RSP+ PR   +S + ++R
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +1

Query: 325 SLPRRKAHPL-------PGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPT 483
           S P+RK  P+       P R+ +  PR+ +RSP      + S  + +R+S      R+P 
Sbjct: 75  SPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRIS------RSPV 128

Query: 484 QSKRRCLTQYMSQSTDPSPSRYMCXNLTPLKRKFMFQSKCTCP 612
           +  R    + +S+S  P P R       P  ++   QS+   P
Sbjct: 129 RRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAKRRRDQSRSKSP 171


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           P P+    P PV   VPQP PV    P+P
Sbjct: 4   PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           P PV   +P PV V +P P P+    P+P
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDC 451
           +P PV + +P P+ + +P P P+    P+P   +C
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           IP PV    P P  V VP P P+    P+P
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           +P P+   IP PV V  P P PV    P+P
Sbjct: 1   MPPPIPIPIPAPVPVPAPVPQPVPVPMPMP 30



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           IP P    +P PV   VP P P+    P+P
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMP 36


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 529
           P P  K +P P+  H P+P+P     P P          +    P  K   +P   P  +
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKPKLK 269

Query: 530 TRPR 541
            +P+
Sbjct: 270 LKPK 273



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPY--PVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPS 523
           P+P     P P+  H P+P+  P+    P+P  +    +  ++   P+      P   P 
Sbjct: 58  PFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPK 117

Query: 524 RQTRP 538
            + +P
Sbjct: 118 HKPKP 122


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = +2

Query: 356 PVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTR 535
           PV +  P P     PQ Y   Q  P+       G S      P +  GA+P   P     
Sbjct: 478 PVGRYAPMPPPYGAPQDYHPQQGPPMVQMMQQPGPSGYYPQRPGQPTGAVPGPGPQGYMN 537

Query: 536 PRQGI 550
           P+ G+
Sbjct: 538 PQMGM 542


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +1

Query: 334 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 501
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R  ++S RR 
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210

Query: 502 LTQYMSQSTDPSPSR 546
                  +  PS SR
Sbjct: 211 REDPRKVARKPSRSR 225


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +1

Query: 334 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 501
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R  ++S RR 
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210

Query: 502 LTQYMSQSTDPSPSR 546
                  +  PS SR
Sbjct: 211 REDPRKVARKPSRSR 225


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS 439
           P PV + +P PV V VP P  V    P+P+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPT 178



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYP 412
           +P PV  ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYPVCQT--CPLP 436
           +P PV+  +P  V V VP P PV Q   C +P
Sbjct: 158 VPVPVQVPVPIRVPVPVPVPTPVYQPTYCAVP 189


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSR- 526
           P P     P P     P P   C+  P+P    CQ  ++     PS     + +  P+  
Sbjct: 114 PAPAAPCCP-PPPPPTPSPLVCCKQAPVPENPCCQIVAAAMPPPPSAPACCVAAPVPTNP 172

Query: 527 --QTRPRQGICAXTLPR 571
             Q  PR   C  + PR
Sbjct: 173 CCQPAPRPAPCVCSAPR 189


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 353 YPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPS 523
           YP+  +I YP  ++  +P P  QT P P+        +R +T+P       P   PS
Sbjct: 315 YPMISEIRYP-DLNTMRPEPTAQTPPAPAAPPAAPALNRQSTIPPVAMTQRPMIPPS 370


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 436
           +P PVE+  P P  V  P P PV  + P P
Sbjct: 214 VPAPVEQIAPPPAPVQDPAPAPVEPSDPAP 243


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/73 (24%), Positives = 27/73 (36%)
 Frame = +2

Query: 350 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 529
           P P   +   PV    P P P  +  P P+    Q      A  P+ +E   P++ P+ +
Sbjct: 655 PAPAAAEYAAPVAEETPAPAPAAEETPAPA----QAAEETPAPAPAAEE--TPASAPAAE 708

Query: 530 TRPRQGICAXTLP 568
             P     A   P
Sbjct: 709 ETPAPAPAAEEAP 721


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,719
Number of Sequences: 27780
Number of extensions: 237894
Number of successful extensions: 886
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)