Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E21
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_37935| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07) 33 0.30
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 33 0.39
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06) 32 0.69
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16) 31 0.91
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05) 31 0.91
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09) 31 1.2
SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21) 30 2.1
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7) 30 2.8
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 29 3.7
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09) 29 3.7
SB_17754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 29 4.8
SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12) 29 4.8
SB_59560| Best HMM Match : ShTK (HMM E-Value=1.6) 29 6.4
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09) 28 8.5
>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 36.3 bits (80), Expect = 0.032
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 544 DNKCCYNRKD--DCSVPILGTLCYCDEFCDHTRHHDDCCPDYKKVCSPPQIXQYRANTSN 717
D +C +D D S P C+CD+ C + DCC DY+K C P + + R + +
Sbjct: 32 DERCNKTSRDWNDISQP----KCFCDDMCVAFK---DCCHDYEKKCGRPSVIESRESVED 84
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 36.3 bits (80), Expect = 0.032
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 601 LCYCDEFCDHTRHHDDCCPDYKKV 672
+C+CDEFC+ DCCPD+K V
Sbjct: 481 VCFCDEFCEPA---GDCCPDFKAV 501
>SB_37935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 601 LCYCDEFCDHTRHHDDCCPDYKKVC 675
+CYCDE C+ DCC DY+ C
Sbjct: 3 VCYCDEVCE---RFVDCCADYEHFC 24
>SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)
Length = 656
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 601 LCYCDEFCDHTRHHDDCCPDYKKVC 675
+CYCDE C+ DCC DY+ C
Sbjct: 449 VCYCDEVCE---RFVDCCADYEHFC 470
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVCSPPQIXQYRANTSNR 720
CYCD C+ DCC DY+ C+ R +T R
Sbjct: 174 CYCDVICNEI---GDCCYDYRSKCNITSTAPRRESTPKR 209
>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 592 LGTLCYCDEFCDHTRHHDDCCPDYKKVCSPPQIXQYRANTSNRLMHGTIKXQRLQ 756
L +CYCD C+ DCC DY C + + N M+ I Q Q
Sbjct: 244 LELICYCDHQCEQ---FVDCCADYGHFCKLNATGNFTISKDNISMNSYIGPQSAQ 295
>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
Length = 1003
Score = 31.9 bits (69), Expect = 0.69
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVC 675
CYCD C++ +DCC DY+ C
Sbjct: 279 CYCDAKCEN---FEDCCADYEHFC 299
>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
Length = 736
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVCSPPQIXQYRANTSNRLMHGTIK 741
C CD +C R+ DCC DY C I N G +K
Sbjct: 182 CMCDRYC---RYFGDCCADYLTYCVKDHIPNPTVWPENSNSSGDLK 224
>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
Length = 375
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVCSPPQIXQYRANTSNRLMHGTIK 741
C CD +C R+ DCC DY C I N G +K
Sbjct: 156 CMCDRYC---RYFGDCCADYLTYCVKDHIPNPTVWPENSNSSGDLK 198
>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
Length = 1069
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 592 LGTLCYCDEFCDHTRHHDDCCPDYKKVC 675
L LCYCD C+ DCC DY+ C
Sbjct: 291 LDLLCYCDGECEKFL---DCCADYEHFC 315
>SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 523 YCAARPDDNKCCYNRKDDCSVPILGTLCYCDEFCDHTRHHDDCCPDYKKVC 675
YC D C + D C YC ++ D+ R + D C DY C
Sbjct: 217 YCRDNTDYTDYCRDNTDYCR----DYTDYCRDYTDYCRDYTDYCHDYTDYC 263
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC + D+ R H D C DY C
Sbjct: 338 YCRGYTDYCRDHTDYCHDYTDYC 360
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 255 YCHDYTDYCRDYTDYCHDYTDYC 277
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 589 ILGTLCYCDEFCDHTRHHDDCCPDYKKVC 675
I+ T YC ++ D+ R H D C D C
Sbjct: 311 IVMTTDYCRDYTDYCRDHTDYCHDNTDYC 339
>SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)
Length = 242
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = -3
Query: 676 CILSCNRD----SSHRGVLCDHRTRRNSREYPISALSNRLF-DCSS 554
CI+ CN++ ++H GVL DHR R S ++ + L+ DCS+
Sbjct: 135 CIVVCNKNDLPLATHLGVLTDHRGLRISAQHLVQTEWQSLWIDCSA 180
>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
Length = 177
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 503 QNCSTAGTAPRVQTTINAATIEKTIAQCRYWVLSAIATSSVITQDTTMTAVPIT 664
++CS AG PR + A +TIA + S+ T++ I +T T IT
Sbjct: 73 KDCSQAGRVPRCISPTTATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTIT 126
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +1
Query: 523 YCAARPDDNKCCYNRKDDCSVPILGTLC--YCDEFCDHTRHHDDCCPDYKKVC 675
Y + N CC K DC + C ++ C ++ DCC D K C
Sbjct: 176 YDCCKEVQNDCCKEVKYDCCKDLTNDCCKEVQNDCCKEVKY--DCCKDLKNDC 226
>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
Length = 1338
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVCSPPQIXQYRANTSN 717
C+CD C+ H DCC Y C+ + AN S+
Sbjct: 438 CFCDVSCEL---HGDCCAGYYTACNSSSGTRNLANDSS 472
>SB_17754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC + D+ R H D C DY C
Sbjct: 208 YCRGYTDYCRDHTDYCHDYTDYC 230
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 589 ILGTLCYCDEFCDHTRHHDDCCPDYKKVC 675
I+ T YC ++ D+ R H D C D C
Sbjct: 181 IVMTTDYCRDYTDYCRDHTDYCHDNTDYC 209
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVC 675
C+CD +C+ ++DCC DY C
Sbjct: 542 CFCDPYCNI---YEDCCYDYAFEC 562
>SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)
Length = 873
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVC 675
C+CD +C +DCC DY + C
Sbjct: 54 CHCDPYCTML---NDCCADYDQQC 74
>SB_59560| Best HMM Match : ShTK (HMM E-Value=1.6)
Length = 263
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 9 YCHDYTDYCRDYTDYCRDYTDYC 31
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 16 YCRDYTDYCRDYTDYCRDYTDYC 38
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 23 YCRDYTDYCRDYTDYCRDYTDYC 45
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 30 YCRDYTDYCRDYTDYCRDYTDYC 52
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 37 YCRDYTDYCRDYTDYCRDYTDYC 59
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 44 YCRDYTDYCRDYTDYCRDYTDYC 66
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 51 YCRDYTDYCRDYTDYCRDYTDYC 73
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 58 YCRDYTDYCRDYTDYCRDYTDYC 80
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 65 YCRDYTDYCRDYTDYCRDYTDYC 87
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 72 YCRDYTDYCRDYTDYCRDYTDYC 94
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 79 YCRDYTDYCRDYTDYCRDYTDYC 101
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 93 YCRDYTDYCRENTDYCRDYTDYC 115
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 107 YCRDYTDYCRDYTDYCRDYTDYC 129
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 114 YCRDYTDYCRDYTDYCRDYTDYC 136
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 121 YCRDYTDYCRDYTDYCRDYTDYC 143
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 128 YCRDYTDYCRDYTDYCRDYTDYC 150
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 135 YCRDYTDYCRDYTDYCRDYTDYC 157
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 142 YCRDYTDYCRDYTDYCRDYTDYC 164
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 149 YCRDYTDYCRDYTDYCRDYTDYC 171
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 156 YCRDYTDYCRDYTDYCRDYTDYC 178
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 163 YCRDYTDYCRDYTDYCRDYTDYC 185
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 170 YCRDYTDYCRDYTDYCRDYTDYC 192
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 177 YCRDYTDYCRDYTDYCRDYTDYC 199
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 184 YCRDYTDYCRDYTDYCRDYTDYC 206
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 191 YCRDYTDYCRDYTDYCRDYTDYC 213
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 198 YCRDYTDYCRDYTDYCRDYTDYC 220
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 205 YCRDYTDYCRDYTDYCRDYTDYC 227
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 212 YCRDYTDYCRDYTDYCRDYTDYC 234
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 219 YCRDYTDYCRDYTDYCRDYTDYC 241
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 226 YCRDYTDYCRDYTDYCRDYTDYC 248
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 233 YCRDYTDYCRDYTDYCRDYTDYC 255
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 607 YCDEFCDHTRHHDDCCPDYKKVC 675
YC ++ D+ R + D C DY C
Sbjct: 240 YCRDYTDYCRDYTDYCRDYTDYC 262
>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
Length = 712
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 604 CYCDEFCDHTRHHDDCCPDYKKVC 675
CYCD+ C DCC DY C
Sbjct: 83 CYCDDLCSSL---GDCCYDYIPRC 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,401,967
Number of Sequences: 59808
Number of extensions: 504207
Number of successful extensions: 1305
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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