Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E20
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    65   5e-11
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /...    63   3e-10
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    62   3e-10
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    56   3e-08
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr...    30   1.7  
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr...    30   1.7  
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr...    30   1.7  
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ...    28   9.1  

>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +1

Query: 208 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 387
           A + +G V WFN   GYGFI  +D   ++FVHQ++I      +  RS+  G+AVEFA+  
Sbjct: 8   AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63

Query: 388 GEKG-FEAAGVTGPGGEPVK 444
           G  G  +A  VT PGG  +K
Sbjct: 64  GSDGKTKAVNVTAPGGGSLK 83


>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
           glycine-rich protein (GRP2) identical to Glycine-rich
           protein 2b (AtGRP2b) [Arabidopsis thaliana]
           SWISS-PROT:Q38896; contains Pfam domains PF00313:
           'Cold-shock' DNA-binding domain and PF00098: Zinc
           knuckle
          Length = 201

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +1

Query: 211 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 390
           ++  GTVKWF+ + G+GFI  +D  +D+FVHQ++I      +  RS+   E+VEF V   
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVD 68

Query: 391 EKGF-EAAGVTGPGGEPVKGS 450
             G  +A  V+GP G PV+G+
Sbjct: 69  NSGRPKAIEVSGPDGAPVQGN 89


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +1

Query: 211 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VA 387
           E+  G+VKWF+ + G+GFI  +D  +D+FVHQ++I      +  RS+   EAVEF V + 
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEID 64

Query: 388 GEKGFEAAGVTGPGGEPVKGS 450
                +A  V+GP G PV+G+
Sbjct: 65  NNNRPKAIDVSGPDGAPVQGN 85


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = +1

Query: 208 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 387
           A +  G V WF+   GYGFI  +D  E++FVHQ++I  +      RS+  GE+VE+ +  
Sbjct: 8   AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIAL 63

Query: 388 GEKG-FEAAGVTGPGG 432
           G  G  +A  VT PGG
Sbjct: 64  GSDGKTKAIEVTAPGG 79


>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 346 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 498
           S G+   +   +  GE G    G+TG G EPVK       KRRG  R+Y P
Sbjct: 69  SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108


>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 346 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 498
           S G+   +   +  GE G    G+TG G EPVK       KRRG  R+Y P
Sbjct: 69  SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108


>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 346 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFP 498
           S G+   +   +  GE G    G+TG G EPVK       KRRG  R+Y P
Sbjct: 69  SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKYGP 108


>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
           Pinus taeda [GI:17978649]; contains non-consensus GG
           acceptor splice site at exon 4
          Length = 317

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 655 AKIATEKTALRWYNASFLTLISLCTPLV 572
           AK  TE+ AL W   +F  +++LC  ++
Sbjct: 158 AKTLTEREALEWSKRNFADVVTLCPSVI 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,548
Number of Sequences: 28952
Number of extensions: 225529
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)