Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E19
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    29   0.64 
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    27   2.6  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    27   3.4  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 422 NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRD 559
           ++F   +G + RG L    R    + A+A+EH CVRC +   MT+D
Sbjct: 342 SIFAWTRGLAHRGRLDGNERLV--KFANALEHACVRCVEKGIMTKD 385


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 448 VTLGTREQISGAFTSHVVIGLGRGGGFMYTTALVEF 341
           +T+ ++  ++G  +SH V G G   G+++    VEF
Sbjct: 430 LTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEF 465


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 249 LSTEQLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYINPPPRPRPMTTW 404
           LS + + Q +      PK   + G  L++ P +   +    P P+P+P T W
Sbjct: 43  LSRDNVQQLVNKMISLPKERTSDGVLLQL-PETVTPLPRAKPLPKPKPETKW 93


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 422 FRGIYIPRSHRSRSRRWIYVY 360
           F  +Y+PRSHR  S R  Y Y
Sbjct: 353 FSRLYVPRSHRRSSDRSHYSY 373


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 422 FRGIYIPRSHRSRSRRWIYVY 360
           F  +Y+PRSHR  S R  Y Y
Sbjct: 353 FSRLYVPRSHRRSSDRSHYSY 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,028
Number of Sequences: 5004
Number of extensions: 60169
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)