Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E19
(860 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 30 2.1
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_36815| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 30 2.8
SB_52916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32) 29 6.4
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08) 28 8.5
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 37.1 bits (82), Expect = 0.018
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 437 PKGDSGRGSLGSTPRS-DSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWGRV 607
P+ S G + PR +D C RC K + + DG +++ E C+YH GR+
Sbjct: 1186 PRPTSTPGKVVFKPRKVQKVTHSDPNRRTCHRCGKPYSVLDDGTHMRHEECVYHVGRL 1243
>SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 31.9 bits (69), Expect = 0.69
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 446 DSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTR 556
DS G + S SDEE D + CV CDK F+ T+
Sbjct: 277 DSEFGRVDDVTGSQSDEE-DVEQFYCVACDKSFKSTK 312
>SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 757
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 384 PRPMTTWDVNAPEICSRVPRV 446
PRP T+WDV+ E+C+ RV
Sbjct: 410 PRPSTSWDVDDAELCAVADRV 430
>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 384 PRPMTTWDVNAPEICSRVPRV 446
PRP T+WDV+ E+C+ RV
Sbjct: 412 PRPSTSWDVDDAELCAVADRV 432
>SB_36815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 477 GVDPKDPRPLSPLGPGNK 424
G+ PKDPR L+ +G GNK
Sbjct: 69 GIHPKDPRGLAAIGQGNK 86
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 29.9 bits (64), Expect = 2.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 360 VYINPPPRPRPMTTWDVN 413
V++N PP+P+ +TWDV+
Sbjct: 792 VFVNKPPKPKYSSTWDVS 809
>SB_52916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 440 KGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEET 583
K S GS+G SD+ D + C++C KM+ M E+V E T
Sbjct: 230 KSASVSGSMGLQNTKASDKSEDGEKQKCLKCRKMYSMF---EHVDEVT 274
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 33 HVPLTQAPRSYFDSMCTQANQETCIFVFNSTIGF 134
HVP T P+ +FD +QA++ T ST F
Sbjct: 266 HVPATSDPKGFFDQQGSQASERTGTAPPKSTANF 299
>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 694 YXLHT*DRXTXHPLEPSIDLQHAYPRITTNT 602
Y HT D+ T + + +QH PR T+NT
Sbjct: 360 YTSHTMDQGTHPTIRTKVHIQHHGPRYTSNT 390
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 261 QLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYI 368
+L Q L +H+ + R+ G PL++E N + ++ I
Sbjct: 413 KLTQVLNTHYAAQHRILLTGTPLQVELNEEETILII 448
>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
Length = 884
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 261 QLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYI 368
+L Q L +H+ + R+ G PL++E N + ++ I
Sbjct: 844 KLTQVLNTHYAAQHRILLTGTPLQVELNEEETILII 879
>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
Length = 961
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 342 NSTKAVVYINPPPRPRPMTTWDVNAPEICSRVPRVTAVAGPWGQLRDLTVTKKRMLWN 515
N T + + PP RP P+ + V I ++ ++A + DL V+K R+ W+
Sbjct: 761 NFTTSTLTFIPPERPGPVRDFRVTGKHILKNKAQI-SIAWRKPENSDLPVSKYRVYWS 817
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,488,880
Number of Sequences: 59808
Number of extensions: 519779
Number of successful extensions: 1390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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