Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E19
         (860 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.      40   0.015
BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.     40   0.015
AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.      40   0.015
BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1...    39   0.027
AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.     39   0.027
AL590103-7|CAI12130.1|   93|Homo sapiens heparan sulfate proteog...    33   1.3  
AF103426-1|AAD19426.1|  104|Homo sapiens immunoglobulin kappa li...    31   4.1  

>BC113453-1|AAI13454.2|  318|Homo sapiens REXO1L1 protein protein.
          Length = 318

 Score = 39.5 bits (88), Expect = 0.015
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 422 NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWG 601
           N +P P  +   G++  T +     ++     +C RC   + ++  G  V+++ C YHWG
Sbjct: 26  NGYPFPHPERPGGAVLFTGQGKGPGDSSC--RVCCRCGTEYLVSSSGRCVRDQLCYYHWG 83

Query: 602 RVSS 613
           RV S
Sbjct: 84  RVRS 87


>BC112074-1|AAI12075.1|  347|Homo sapiens REXO1L2P protein protein.
          Length = 347

 Score = 39.5 bits (88), Expect = 0.015
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 422 NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWG 601
           N +P P  +   G++  T +     ++     +C RC   + ++  G  V+++ C YHWG
Sbjct: 55  NGYPFPHPERPGGAVLFTGQGKGPGDSSC--RVCCRCGTEYLVSSSGRCVRDQLCYYHWG 112

Query: 602 RVSS 613
           RV S
Sbjct: 113 RVRS 116


>AF495523-1|AAN77012.1|  318|Homo sapiens exonuclease GOR protein.
          Length = 318

 Score = 39.5 bits (88), Expect = 0.015
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 422 NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWG 601
           N +P P  +   G++  T +     ++     +C RC   + ++  G  V+++ C YHWG
Sbjct: 26  NGYPFPHPERPGGAVLFTGQGKGPGDSSC--RVCCRCGTEYLVSSSGRCVRDQLCYYHWG 83

Query: 602 RVSS 613
           RV S
Sbjct: 84  RVRS 87


>BC032244-1|AAH32244.1| 1221|Homo sapiens REX1, RNA exonuclease 1
            homolog (S. cerevisiae) protein.
          Length = 1221

 Score = 38.7 bits (86), Expect = 0.027
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 422  NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWG 601
            N +P P  +   G++  T  ++     D+    C RC   + ++  G  +++E C YHWG
Sbjct: 942  NGYPFPHPERPGGAIIFT--AEEKRPKDSSCRTCCRCGTEYLVSSSGRCIRDEECYYHWG 999

Query: 602  RV 607
            R+
Sbjct: 1000 RL 1001


>AB032964-1|BAA86452.1| 1239|Homo sapiens KIAA1138 protein protein.
          Length = 1239

 Score = 38.7 bits (86), Expect = 0.027
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 422  NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWG 601
            N +P P  +   G++  T  ++     D+    C RC   + ++  G  +++E C YHWG
Sbjct: 960  NGYPFPHPERPGGAIIFT--AEEKRPKDSSCRTCCRCGTEYLVSSSGRCIRDEECYYHWG 1017

Query: 602  RV 607
            R+
Sbjct: 1018 RL 1019


>AL590103-7|CAI12130.1|   93|Homo sapiens heparan sulfate
           proteoglycan 2 protein.
          Length = 93

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 288 FLSPKRMWTLGYPLEIEPNSTKAVVYINPPPR---PRPMTTWDVNAPEICSRVPRVTAVA 458
           FL  +   T    L ++P  T+A      P R   PRP+ +     PE+   +PR   + 
Sbjct: 16  FLGGRPPGTSCCTLSVQPLRTQAATAAGSPTRWAQPRPLPSCSSKNPELGPELPRDVYMP 75

Query: 459 GPW 467
           GPW
Sbjct: 76  GPW 78


>AF103426-1|AAD19426.1|  104|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 104

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 32  ARTSNSSSALVFRLYVYTSQPRN--MHFCIQFHDW 130
           AR S S S   F L + + QP +  +++C Q+HDW
Sbjct: 57  ARFSGSGSGTEFTLTITSLQPEDFAVYYCQQYHDW 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,779,214
Number of Sequences: 237096
Number of extensions: 2541935
Number of successful extensions: 10422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10419
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)