Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E19
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 695 LVPGDERTPXKXTXPPXSP 751
           +V GD  TP K   PP  P
Sbjct: 330 IVLGDSDTPPKPAPPPPPP 348


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 401 VGCKCP*NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHL 520
           V C  P    P  + +SGR     TPR +S  + D    +
Sbjct: 390 VACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRI 429


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 437 PKGDSGRGSLGSTPRSDSDEE-ADAVEHL 520
           PK  S  G+L +T    +DEE A A +HL
Sbjct: 358 PKAHSKGGTLENTINGRADEEAAPAPQHL 386


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 437 PKGDSGRGSLGSTPRSDSDEE-ADAVEHL 520
           PK  S  G+L +T    +DEE A A +HL
Sbjct: 358 PKAHSKGGTLENTINGRADEEAAPAPQHL 386


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 437 PKGDSGRGSLGSTPRSDSDEE-ADAVEHL 520
           PK  S  G+L +T    +DEE A A +HL
Sbjct: 296 PKAHSKGGTLENTINGRADEEAAPAPQHL 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,226
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)