Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E19
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15970.1 68417.m02424 expressed protein similar to GI:2827651...    31   1.3  
At3g62590.1 68416.m07031 lipase class 3 family protein contains ...    30   1.7  
At3g25290.1 68416.m03158 auxin-responsive family protein similar...    28   7.0  
At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family...    28   7.0  
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near...    28   7.0  
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near...    28   7.0  

>At4g15970.1 68417.m02424 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853 from
           [Arabidopsis thaliana]
          Length = 367

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = -1

Query: 557 HESF*TFYHNVHTSVPQHPLLRHCQIAELTPRTRDRC---HPW------DPGTNFRG--I 411
           + +F  F H+ H      PLLRH  +A L      RC   HP        PG +F G  +
Sbjct: 69  NSTFDLFLHSFHVGKGTKPLLRHLVVACLDEEAYSRCSEVHPHRCYFMKTPGIDFAGDKM 128

Query: 410 YIPRSHRSRSRRWIYVYDRFSRIRFNF 330
           ++   +     R I       ++R+NF
Sbjct: 129 FMTPDYLKMMWRRIEFLGTLLKLRYNF 155


>At3g62590.1 68416.m07031 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +2

Query: 422 NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRDGEYVKEETCLYHWG 601
           +++ G +  SG G  G     +   E    E LC  CD   R+  D E  ++E  ++ + 
Sbjct: 100 SIWKGKRQRSGGGGGGEEDEEEEVAEPKKKEDLCEECD-FCRIDDDDEDEEKEKTVFEFS 158

Query: 602 RVSSDSRVRMLQINARLKRMXCXAIS 679
            + S   V   Q+ A+L  +   A S
Sbjct: 159 EMLSKIPVEDAQMFAKLSFLGNLAYS 184


>At3g25290.1 68416.m03158 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 393

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 342 NSTKAVVYINPPPRPRPMTTWDVNAPEICSRVPRVTAVA 458
           N+T AVV+  PP +P     W +N P+    V   T VA
Sbjct: 60  NTTLAVVFSAPPAKPGGWIAWAIN-PKATGMVGSQTLVA 97


>At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 331

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 321 YPLEIEPNSTKAVVYINPPPR-PRPMTTWDVNAPEICSR 434
           Y  +I P   K+ V I PPP  P P+TTW   A  + +R
Sbjct: 55  YSSQIRP--VKSPVPIAPPPEFPGPVTTWPTPADFLATR 91


>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
           identical to type II CPD photolyase PHR1 [Arabidopsis
           thaliana] GI:2984707; similar to class II DNA photolyase
           (GI:5081541) [Chlamydomonas reinhardtii]; supporting
           cDNA gi|2984706|gb|AF053365.1|AF053365
          Length = 496

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 274 PSGHISCLQSACGPWDILWK 333
           PSG++ C+ S CG  D  WK
Sbjct: 419 PSGYVGCMWSICGVHDQGWK 438


>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
           identical to type II CPD photolyase PHR1 [Arabidopsis
           thaliana] GI:2984707; similar to class II DNA photolyase
           (GI:5081541) [Chlamydomonas reinhardtii]; supporting
           cDNA gi|2984706|gb|AF053365.1|AF053365
          Length = 490

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 274 PSGHISCLQSACGPWDILWK 333
           PSG++ C+ S CG  D  WK
Sbjct: 413 PSGYVGCMWSICGVHDQGWK 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,617,595
Number of Sequences: 28952
Number of extensions: 345720
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)