Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E17
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 371 e-104
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 359 e-100
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 324 7e-90
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 302 3e-83
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 249 3e-67
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 137 2e-33
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 103 2e-23
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 68 2e-12
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 30 0.36
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.36
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 28 1.9
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 27 4.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.9
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.9
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 371 bits (912), Expect = e-104
Identities = 173/211 (81%), Positives = 193/211 (91%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
YVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GK
Sbjct: 39 YVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGK 98
Query: 393 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 572
P ++V YKGE KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKD
Sbjct: 99 PVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKD 158
Query: 573 AGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVK 752
AG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTIE+GIFEVK
Sbjct: 159 AGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVK 218
Query: 753 STAGDTHLGGEDFDNRMVNHFVQEFKRKXKR 845
+TAGDTHLGGEDFD+R+VNHF+QEFKRK K+
Sbjct: 219 ATAGDTHLGGEDFDSRLVNHFIQEFKRKNKK 249
Score = 52.8 bits (121), Expect = 6e-08
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +2
Query: 107 AVGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
++GIDLGTTYSCVG F + +VEIIANDQG +
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNR 34
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 359 bits (882), Expect = e-100
Identities = 168/211 (79%), Positives = 189/211 (89%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
YVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ GK
Sbjct: 39 YVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGK 98
Query: 393 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 572
P I+V +KGE KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKD
Sbjct: 99 PLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKD 158
Query: 573 AGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVK 752
AG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTIE+GIFEVK
Sbjct: 159 AGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVK 218
Query: 753 STAGDTHLGGEDFDNRMVNHFVQEFKRKXKR 845
+TAGDTHLGGEDFD+R+VNHF QEFKRK K+
Sbjct: 219 ATAGDTHLGGEDFDSRLVNHFAQEFKRKNKK 249
Score = 52.8 bits (121), Expect = 6e-08
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +2
Query: 107 AVGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
++GIDLGTTYSCVG F + +VEIIANDQG +
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNR 34
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 324 bits (797), Expect = 7e-90
Identities = 151/210 (71%), Positives = 176/210 (83%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
+VAFT+TERL+GDAAKNQ AMNP NT+FDAKRLIGR++ED Q D+KHWPF+V+ + G
Sbjct: 43 FVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGI 102
Query: 393 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 572
P I+V Y GE K F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKD
Sbjct: 103 PTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKD 162
Query: 573 AGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVK 752
AG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I+ G+FEV
Sbjct: 163 AGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVL 222
Query: 753 STAGDTHLGGEDFDNRMVNHFVQEFKRKXK 842
+TAGDTHLGGEDFDN +V HF+QEFKRK K
Sbjct: 223 ATAGDTHLGGEDFDNALVEHFIQEFKRKQK 252
Score = 48.8 bits (111), Expect = 1e-06
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2
Query: 107 AVGIDLGTTYSCVGVFQHGKVEIIANDQG 193
A+GIDLGTTYSCV V++ VEII NDQG
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQG 36
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 302 bits (742), Expect = 3e-83
Identities = 135/208 (64%), Positives = 178/208 (85%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
YVAFT+ ERL+G+AAKNQ NP NTIFD KRLIGRKF++ T+ D+K +PF +V+D +
Sbjct: 72 YVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNR 131
Query: 393 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 572
P ++V G+ K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKD
Sbjct: 132 PLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKD 191
Query: 573 AGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVK 752
AGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I++G+FEV
Sbjct: 192 AGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVL 250
Query: 753 STAGDTHLGGEDFDNRMVNHFVQEFKRK 836
+T+GDTHLGGEDFDNR++N+ + + RK
Sbjct: 251 ATSGDTHLGGEDFDNRVINYLARTYNRK 278
Score = 53.2 bits (122), Expect = 4e-08
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +2
Query: 110 VGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
+GIDLGTTYSCV V ++G+VEIIANDQG +
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNR 67
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 249 bits (610), Expect = 3e-67
Identities = 120/207 (57%), Positives = 153/207 (73%), Gaps = 1/207 (0%)
Frame = +3
Query: 216 VAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
VAFT D ERL+G +AK Q +NP NT F KRLIGR+F++ VQ D+K P+++V
Sbjct: 88 VAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG 147
Query: 393 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 572
+ KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK
Sbjct: 148 D---AWLEARGKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKA 204
Query: 573 AGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVK 752
AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+SIL + +G+FEV+
Sbjct: 205 AGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDISILELNNGVFEVR 262
Query: 753 STAGDTHLGGEDFDNRMVNHFVQEFKR 833
ST GDTHLGGEDFD +V H V+ FK+
Sbjct: 263 STNGDTHLGGEDFDVALVRHIVETFKK 289
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 98 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQG 193
K P +GIDLGTT SC+ + + ++IAN +G
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEG 80
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 137 bits (332), Expect = 2e-33
Identities = 77/214 (35%), Positives = 118/214 (55%), Gaps = 5/214 (2%)
Frame = +3
Query: 216 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGK 392
V++ + R +G+AAK+ A N NT+ KRL GR ++D ++ + ++ G
Sbjct: 43 VSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGF 102
Query: 393 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 572
KV Y E+ F ++ + TK+K AEA L +V + VI++PA+F D QR+A +
Sbjct: 103 VGAKVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLE 162
Query: 573 AGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGI 740
A I+GLN LR++N+ AAA+ YG+ K E R V I D G + VSI+ G
Sbjct: 163 AANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQ 222
Query: 741 FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKXK 842
F +KST D +LG + D ++++F EFK K K
Sbjct: 223 FHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYK 256
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 103 bits (248), Expect = 2e-23
Identities = 56/203 (27%), Positives = 113/203 (55%), Gaps = 6/203 (2%)
Frame = +3
Query: 246 GDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED 425
G A+ Q+ N +N++ + + L+G+ ++ T+ H+ V+ G+ K+ + ++
Sbjct: 72 GVQARGQLVRNADNSVTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDE 129
Query: 426 ------KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTIS 587
K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +
Sbjct: 130 ESDPKEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEA 189
Query: 588 GLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 767
GL VL++I++P A +A ++ ++ V++ + G +VS+++++ G+ + ++ D
Sbjct: 190 GLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHD 249
Query: 768 THLGGEDFDNRMVNHFVQEFKRK 836
+LGGE + +VN F +EF++K
Sbjct: 250 ENLGGEQLTDVLVNFFAKEFEKK 272
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 110 VGIDLGTTYSCVGVFQHGKVEIIANDQGQQDHSVLCCVHRHRASH 244
+GI G S + + GK +++AN++G + + H + H
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYH 71
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 67.7 bits (158), Expect = 2e-12
Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Frame = +3
Query: 216 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGK 392
VAF ER+ G A N P ++I + K L+ E VQ +P + + +
Sbjct: 61 VAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEE 120
Query: 393 PKIKVAYK-GEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 569
+++ +++ + EE+ +M + AE + + + V+TVP +FN+ QR
Sbjct: 121 TTSGISFVISDEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILL 180
Query: 570 DAGTISGLNVLRIINEPTAAAIAYGLDKK-GTGERNVLIFDLGGGTFDVSILTIE 731
+A I +VL +I++ A AI Y L + T +I+D G G+ ++++ +
Sbjct: 181 EAARILNKHVLALIDDNVAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVISFD 235
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 216 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 395
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 396 KIKVAYKGEDKTFFPE 443
+K+ G + F +
Sbjct: 185 -LKLMIDGTVRNFIAQ 199
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.36
Identities = 36/157 (22%), Positives = 65/157 (41%)
Frame = -2
Query: 793 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP*AIAAAVGS 614
S SS P S + DF+S I + + +S +P S +S+ S S P + + ++ S
Sbjct: 541 SSSSIP--TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSST--SSPSSTSLSISS 596
Query: 613 LMIRRTFKPEMVPASFVACL*ESLKYAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGK 434
TF S + I++ T+L + S + +S+ + S
Sbjct: 597 SSTSSTFSSAST---------SSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSS 647
Query: 433 KVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSN 323
+LSS + + + SL+T S+ T+ SS+
Sbjct: 648 SILSSSIST---IPISSSLSTYSSSVIPSSSTLVSSS 681
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 793 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 683
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -2
Query: 793 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 647
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 113 GIDLGTTYSCVGVFQHGKVEIIANDQGQQDHSVL 214
G LG TY+ V Q G VE+ D Q H+++
Sbjct: 1279 GCFLGNTYAFASVTQDGSVEVHRLDVNNQRHTLI 1312
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 210 TEWSCXPWSLAMISTFPCWKTPTQEYVVP 124
T+W P+++ + F WK PT VP
Sbjct: 164 TDWYYTPFNILVPDEFKTWKNPTGAEPVP 192
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 645 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 815
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 829 LNSWTKWLTMRLSKSSPPKWVSPAVDF 749
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,444
Number of Sequences: 5004
Number of extensions: 72938
Number of successful extensions: 265
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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