Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E16
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    27   3.4  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    27   3.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   6.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   7.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   7.9  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 165 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 290
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
 Frame = +1

Query: 232 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 399
           SLST  IP+           LS+    S     S  S +++    ++SS   TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293

Query: 400 AGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSA 570
           + +   P  +++    ++ S +S    +   S+ +    +  ++ P   S T++ S+
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTL---SSSSMSSSSSFSSSPTSSSSTISSSS 347


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 316 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 438
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 316 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 438
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 307 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 471
           GH+ +  S   T    TA+S + +SAT S    T+   +   + D+ T   PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASS 195


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 189 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 299
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 325  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 471
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 325  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 471
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 569 PSRSSPKIAVNITSVSRALPASTVAPSEPFSRS 667
           P+ S P  A + T VS+ + AST   +EP  ++
Sbjct: 323 PATSPPATADSKTIVSKTISASTTQQTEPLQQT 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,151
Number of Sequences: 5004
Number of extensions: 62912
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)