Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E16
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP...    29   3.0  
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   4.0  
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b...    29   5.2  
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    28   6.9  
At5g04040.1 68418.m00384 patatin-related contains Patatin domain...    28   9.1  
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ...    28   9.1  
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP...    28   9.1  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    28   9.1  

>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
           isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
           identical to SP|P48483 Serine/threonine protein
           phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
           GI:166799 from [Arabidopsis thaliana]
          Length = 322

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 345 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 521
           +R+YG + DE K       W      + C P  A   E  +CM     PE K+ +E+ N 
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185

Query: 522 FGCPAPGEVSNAG 560
              P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196


>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 378 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 205
           C   G   ++S    +R G   + +++   CEGS SS SS    W R  K+++ R   V 
Sbjct: 31  CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89

Query: 204 LHR 196
           L+R
Sbjct: 90  LNR 92


>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
           boundaries domain protein 11 (LBD11) identical to
           SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
          Length = 229

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +1

Query: 355 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 498
           TAS++ K + T       S T+    PP+    P  P   SP +AC ++R R A
Sbjct: 11  TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -1

Query: 470 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 291
           AD+GLS+       L+  G  +PA+ + ++ +F RE     RTV + +   + C L    
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380

Query: 290 VVKVVAV 270
           +  V  V
Sbjct: 381 LSPVFRV 387


>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
           PF01734
          Length = 825

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 38  LVPGLSSQYEFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 172
           ++  L+S   F+    ++GR      C PR  + PR L +L SPH++
Sbjct: 324 MLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVV 370


>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 415

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -1

Query: 458 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 279
           LS+V K  A   AG F+  A     A +   +  +Q+  VR+G    K     A+  ++ 
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164

Query: 278 VAVLGQVFGICG 243
           + ++G+  GI G
Sbjct: 165 ITLIGKEEGIKG 176


>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
           isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
           identical to SP|P48485 Serine/threonine protein
           phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166803
           {Arabidopsis thaliana}
          Length = 312

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 345 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 521
           +R+YG + DE K       W      + C P  A   E  +CM     PE  N E++ N 
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194

Query: 522 FGCPAPGEVSNAG 560
                P +V +AG
Sbjct: 195 --IERPTDVPDAG 205


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
 Frame = +3

Query: 183 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 359
           W CD        CG  L  D  D  Y    C  + +  C    ++      PH  S    
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286

Query: 360 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 482
           + P +  C +  +  +    +Y C  G  Y   S+   W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624,726
Number of Sequences: 28952
Number of extensions: 371609
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)