Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E15
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family...    29   3.2  
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    28   4.2  

>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 147

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -3

Query: 487 GGGGXFFXXXP--KSFXXKKXPPPFXFXXRGEKTPPPXF 377
           GGGG ++   P   S    K PPP+     G   PPP +
Sbjct: 60  GGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYY 98


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 487 GGGGXFFXXXP-KSFXXKKXPPPFXFXXRGEKTPPP 383
           GGG  ++   P +S    K PPP+    +G   PPP
Sbjct: 75  GGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPP 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,457,134
Number of Sequences: 28952
Number of extensions: 148425
Number of successful extensions: 2354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)