Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E14
         (867 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            60   9e-11
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    39   2e-04
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.3  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   3.0  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 60.1 bits (139), Expect = 9e-11
 Identities = 35/96 (36%), Positives = 51/96 (53%)
 Frame = +3

Query: 312 EILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILL 491
           EI DTAG E++ S+  +Y +  Q  +VVY + N  +F   K   + + R + S  + I L
Sbjct: 76  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQR-QASPNIVIAL 134

Query: 492 VGNKADLEHQREVAHAEGAALAXMWGCPFVEASAKS 599
            GNKADL + R V + E    A      F+E SAK+
Sbjct: 135 AGNKADLANSRVVDYEEAKQYADDNRLLFMETSAKT 170


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 309 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKPMKELITRVK-GSERVPI 485
           L + DTAG E +  +R L       F++ YS+ +  +F+++    +    +K      PI
Sbjct: 56  LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENV--TSKWYPEIKHHCPDAPI 113

Query: 486 LLVGNKADLEHQRE 527
           +LVG K DL   RE
Sbjct: 114 ILVGTKIDLREDRE 127


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 402 MNILLQSLDHFLYTDLASKQTAPCQRCPKFLKXQGELSTSISFL 271
           +N+L +S DH L      +     + C K    +G++  SI  L
Sbjct: 602 LNLLNRSTDHALLAQKRQEHQRLVRECDKIRNQRGQIENSIKEL 645


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 110 CYRNVFTLCAIKCHC 66
           C RN  T+C  KC+C
Sbjct: 803 CKRNGLTICIEKCYC 817


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,036
Number of Sequences: 2352
Number of extensions: 13363
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92613024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)