Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E13
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    30   2.3  
At2g30590.1 68415.m03727 WRKY family transcription factor              30   2.3  
At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    29   4.1  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    29   4.1  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    29   4.1  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    29   4.1  

>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 187 STPTSFNRSRAARITVFGCNFVMLDTLSLINI 92
           S P  FN +RA  +TVF C+   L +   +N+
Sbjct: 492 SLPLQFNTTRAITVTVFSCDKTALPSTITVNV 523


>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 486 LGTRKLGPLEGYSRAAATCSSSTWCHCAGGRR 391
           L +++  PL+G    +  C SS+ CHCA  R+
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRK 292


>At1g55350.4 68414.m06326 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 63   FITDKFGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVGVDGLTTRKLAE 215
            ++ DKFGG+++ +    +   ++Q    +R  LD    +G   L+ RK+++
Sbjct: 1229 YMWDKFGGYLLLLLGLTAKAERVQDEVRLRLFLD---SIGFSDLSARKISK 1276


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 63   FITDKFGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVGVDGLTTRKLAE 215
            ++ DKFGG+++ +    +   ++Q    +R  LD    +G   L+ RK+++
Sbjct: 1229 YMWDKFGGYLLLLLGLTAKAERVQDEVRLRLFLD---SIGFSDLSARKISK 1276


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 63   FITDKFGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVGVDGLTTRKLAE 215
            ++ DKFGG+++ +    +   ++Q    +R  LD    +G   L+ RK+++
Sbjct: 1229 YMWDKFGGYLLLLLGLTAKAERVQDEVRLRLFLD---SIGFSDLSARKISK 1276


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
            identical to calpain-like protein GI:20268660 from
            [Arabidopsis thaliana]; contains Pfam profiles: PF00648
            Calpain family cysteine protease, PF01067 Calpain large
            subunit,domain III; identical to cDNA calpain-like
            protein GI:20268659
          Length = 2151

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 63   FITDKFGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVGVDGLTTRKLAE 215
            ++ DKFGG+++ +    +   ++Q    +R  LD    +G   L+ RK+++
Sbjct: 1229 YMWDKFGGYLLLLLGLTAKAERVQDEVRLRLFLD---SIGFSDLSARKISK 1276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,951
Number of Sequences: 28952
Number of extensions: 285898
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)