Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E11
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 112 7e-26
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 33 0.051
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.36
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.47
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 30 0.47
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 1.4
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 28 1.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 2.5
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 2.5
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 3.3
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 27 3.3
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 4.4
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 4.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 5.8
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 5.8
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.7
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 112 bits (269), Expect = 7e-26
Identities = 73/216 (33%), Positives = 106/216 (49%), Gaps = 4/216 (1%)
Frame = +3
Query: 33 TAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA-TNGAQ 209
T S+ NR ++ + FL G ++ YV+ MY+AW DPNSVHASW A+F+N G
Sbjct: 28 TCLSSLQQNRTFATQPTDDFLTGGAADYVDEMYDAWKKDPNSVHASWQAYFKNVQERGVS 87
Query: 210 PGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQS 389
P A+ PP L Y + L S + + I G ++ VQ ++R+YQS
Sbjct: 88 PSKAFQAPP-LLDYADSYTALDSSLINGNNYADIDVGI---------YMKVQLLVRAYQS 137
Query: 390 RGHLVAQLDPLGISTGDPVSSADWHGGMRAFANEAVIRQHVRFDEADMDRVFKL-PS--T 560
RGH +A+LDPLGI+ S + +H F E+D++R L P
Sbjct: 138 RGHHLAKLDPLGINVNHNRPS-------------ELTLEHYGFTESDLNRTIHLGPGILP 184
Query: 561 TFIGEKEKALPLREILNRLEQAYCNNIGIEFMFINS 668
F K + LREI+ E+ YC + +EF I+S
Sbjct: 185 NFREAGRKTMTLREIVETCEKIYCGSFAVEFTHISS 220
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 673 KQCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAKNGP 807
K+ NWI +E P + + DQK +I RL+ + FE FL P
Sbjct: 222 KRSNWILSHLETPTPFRYSHDQKIMIFDRLSWADSFERFLFTKFP 266
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 33.1 bits (72), Expect = 0.051
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +3
Query: 24 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETM-YNAWLADPNSVHASWDAFFRNATN 200
KP + + N N + + + NG++S+ V Y ++ S F T
Sbjct: 360 KPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNF--RVTQ 417
Query: 201 GAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRS 380
GA P Y PPP + P K ++ T+ S+ + S E + + ++S
Sbjct: 418 GAPPSHTYGPPPPVQP--KPKISPTTPRLSTLALADDMFSSTAKETVPTNEAVFTGDVKS 475
Query: 381 YQSRGHLVAQLDPLGIS--TGDPVSSAD 458
+ S+ + + +PL S +G P +S +
Sbjct: 476 FDSQESNIIESEPLSASNASGKPRTSVN 503
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 30.3 bits (65), Expect = 0.36
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 231 PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQSRGHLVAQ 410
PP+ AP + P T+ V + G+P + G+ I + + Q I S QS GH+
Sbjct: 71 PPSTAPGSAGSTPKTTPVSLNAGVPPSNTGANIT---TNSNNNAQTISSSSQSVGHID-- 125
Query: 411 LDPLGIST 434
+P G+ T
Sbjct: 126 -NPSGLGT 132
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 207 QPGAAYTP--PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 329
QP +A+ P P LAP N+N +++ P+ G M S + +
Sbjct: 1733 QPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAV 1775
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 228 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAI 371
P P PY +N TS+ PS G P+ S + +I ++A Q I
Sbjct: 603 PVPGYTPYMRNPSQHTSVAPSPNGTPTSGNSSTVGSPMI-GYMAPQFI 649
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -1
Query: 679 IVSREF----MNMNSIPMLLQYACSKRFRISLNGSAFSFSPINVVEGSLNTLSMSASSN 515
++S EF N+NS+ LQ + L+ S SF +NV + SL+ S + S N
Sbjct: 315 LISEEFRVLRFNLNSVSRSLQLSPCLTDDEQLSKSLTSFKQVNVTDASLSPNSHNTSDN 373
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 541 TLSMSASSNLTCCLMTASLAKARMPPCQSALDTGSPVDIPNGS 413
++SMS NL L+TAS K++ +S + GS + IP GS
Sbjct: 179 SISMSLRPNLARPLLTASSVKSQ--SVRSLREVGSNLPIPTGS 219
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 198 NGAQPGAAYTPPPNLAPYNKNEVPLTSLV---PSSGGMPSIS 314
+GAQ G+ PP L P+N ++ +L PS +P +S
Sbjct: 493 DGAQSGSPQFPPFELPPHNYSQAQSPNLATPSPSFSSLPDVS 534
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 186 RNATNGAQPGAAYTPPPN---LAPYNKNEVPLTSLVPSSGGMPSISAGSPIN 332
R T+ + P +A +P PN P K E P +++ S+ +++A +P N
Sbjct: 74 RPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSN 125
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -3
Query: 515 SHVLSNDSFVSEGSHAAVPISARHRISGRYSQRVKLRHKMTPRLVTPDDSLHGEVIVDYL 336
S + D EGS A A+ R + LRHK+ L++P L VDY
Sbjct: 318 SDEIEKDKEEEEGSVANEEDVAKRTFHSREQSLLFLRHKLQSSLLSPKQDLSQ---VDYK 374
Query: 335 LVY 327
LV+
Sbjct: 375 LVH 377
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 201 GAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 296
G G+ Y PPPN+ K++ L+ L SSG
Sbjct: 67 GRPIGSVYVPPPNVKNEEKDDA-LSKLAASSG 97
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 87 PFLNGSSSAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNE 263
P N + SA + + ++D PN H DAF ++ + QP +A P L+ ++
Sbjct: 9 PVGNETKSAALNALPKIKISDSPNRHHNLVDAFMQSPSYSTQPKSA-VEPLGLS-FSPGY 66
Query: 264 VPLTSLVPSSGGMPSISAGSPI 329
+ +S P G + S S+ P+
Sbjct: 67 ISPSSQSPHHGPVRSPSSRKPL 88
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 102 SSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSL 281
SS +VET Y A+PNS+ +D ++NG AY P ++ + S
Sbjct: 118 SSPFFVETQYAYQKANPNSIAFLYD--LSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASS 175
Query: 282 VPSSGGMPS 308
+ S PS
Sbjct: 176 LNSHNLTPS 184
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 210 PGAAYTPPPNLAPYN-KNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAI 371
P + + P NL+P +NE P T+ +PS P S S N Q++
Sbjct: 315 PSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPFPSGLSASNSNFASSSFIPQSV 369
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 397 ILWRNLTRWEYRPE----IRCRALIGTAACEPSLT 489
I+WR T+ PE IRC AL+G+ E L+
Sbjct: 68 IIWRKNTKMSLLPEERDFIRCNALLGSIKSENLLS 102
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 565 NVVEGSLNTLSMSASSNLTCCLMTASLAKARMPPCQSALDTGS 437
N+VEG+ ++ S S+SS+ + T S + + P S+ + S
Sbjct: 109 NIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,983
Number of Sequences: 5004
Number of extensions: 73965
Number of successful extensions: 293
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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