Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E11
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 59 6e-20
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 59 1e-18
07_03_0623 - 20033815-20034009,20034308-20034415,20034416-200344... 30 2.0
06_03_0232 - 18507872-18508792 30 2.0
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 29 3.5
05_01_0118 + 817876-818532,818770-818844 29 3.5
08_01_0914 + 9010613-9013316,9013537-9013748 29 4.7
10_08_0439 - 17926021-17927133 29 6.2
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 29 6.2
06_03_0219 - 18227559-18227858,18227864-18228340 29 6.2
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 29 6.2
12_02_1046 + 25662715-25662884,25663163-25663757 28 8.1
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555... 28 8.1
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 59.3 bits (137), Expect(2) = 6e-20
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Frame = +3
Query: 312 SAGSPINEKIIDDHLAVQAIIRSYQSRGHLVAQLDPLGISTGDPVSSADWHGGMRAFANE 491
SAG ++ + I + + + ++R+YQ GH+ A+LDPL + RA ++
Sbjct: 94 SAG--LSGQTIQESMQLLLLVRAYQVNGHMKAKLDPLRLDD-------------RAVPDD 138
Query: 492 AVIRQHVRFDEADMDRVFKLP---STTFIGEKEKALPLREILNRLEQAYCNNIGIEFMFI 662
+ + F EAD+DR F L F+ + L LREIL++LEQAYC IG E+M I
Sbjct: 139 LDLSLY-GFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILSKLEQAYCGPIGYEYMHI 197
Score = 56.4 bits (130), Expect(2) = 6e-20
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +3
Query: 72 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAA 221
S + FL+G+SS Y+E + AW ADP+SV SWD FFRN A P +A
Sbjct: 46 SRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSA 95
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 676 QCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLA 795
+CNW+R ++E + + N D++ ++L RL ST FENFLA
Sbjct: 202 KCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFLA 241
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 59.3 bits (137), Expect(2) = 1e-18
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 312 SAGSP-INEKIIDDHLAVQAIIRSYQSRGHLVAQLDPLGISTGDPVSSADWHGGMRAFAN 488
+A SP I+ + I + + + ++R+YQ GHL A+LDPL + D AF
Sbjct: 98 AATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPLALEERPIPDVLD-----PAFYG 152
Query: 489 EAVIRQHVRFDEADMDRVFKLP---STTFIGEKEKALPLREILNRLEQAYCNNIGIEFMF 659
F EAD+DR F L F+ E LR +L RLEQAYC IG E+M
Sbjct: 153 ---------FSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMH 203
Query: 660 INSLE 674
I E
Sbjct: 204 IPDRE 208
Score = 52.0 bits (119), Expect(2) = 1e-18
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +3
Query: 72 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 191
S + FL+G+SS Y+E + AW ADP SV SWD FFRN
Sbjct: 54 SRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRN 93
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/42 (42%), Positives = 31/42 (73%)
Frame = +1
Query: 673 KQCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAK 798
++CNW+R R+E N + + D+++++L RL ST FE+FLA+
Sbjct: 208 EKCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQ 249
>07_03_0623 -
20033815-20034009,20034308-20034415,20034416-20034478,
20035361-20036221,20036881-20037461,20037551-20037623,
20037756-20037947,20038728-20039513
Length = 952
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 333 EKIIDDHLAVQAIIRSYQSRGHLVAQLDPLGISTGDPVSSADWHGGMRAFANEAVIRQHV 512
E I D LAV+ ++ + HL ++ +P + GDPV A+ +G AN +R
Sbjct: 406 ETRITDELAVEVVVPRKTLQSHLQSEEEPED-ADGDPVGPANSNGSADDEANLTQLRSSS 464
Query: 513 RF 518
F
Sbjct: 465 NF 466
>06_03_0232 - 18507872-18508792
Length = 306
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 231 PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKI 341
PP+ +P VP TS SS PS S+ SPI + +
Sbjct: 146 PPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKAL 182
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 192 ATNGAQPGAAYTP--PPNLAPYNKNEVPLTSLVPSSGGMPSIS 314
AT G+ G P PP+LA + PL+ L+ S+G +PS+S
Sbjct: 479 ATAGSGRGKQSVPSVPPDLAGGTRRTRPLSLLIHSNGVVPSLS 521
>05_01_0118 + 817876-818532,818770-818844
Length = 243
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 505 CLMTASLAKARMPPCQSALDTGSPVDIPNGSSCA 404
C A AKA P C+ A+DT + +P+ SS A
Sbjct: 121 CTTAAMEAKAACPQCKQAMDTEVALVLPSASSPA 154
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 24 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNG 203
K Q + +S+ + L TA+ +NG + + + + DP V +SWDA N TN
Sbjct: 4 KWQLSMLSLLTHALLLLTASSQTINGDDLSALMSFKSLIRNDPRGVLSSWDA-IGNGTNM 62
Query: 204 AQP 212
P
Sbjct: 63 TAP 65
>10_08_0439 - 17926021-17927133
Length = 370
Score = 28.7 bits (61), Expect = 6.2
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Frame = -1
Query: 730 RSSLLRSVAPCAVGSSCIVSR-EFMNMNSIP----MLLQYACSKRFRISLNGSAFSFSPI 566
R+ LL + A A SC R +F+ ++P + +A + + SA + +
Sbjct: 23 RTVLLPASAAAAGALSCPECRGDFIEEVNVPAPAIIPFPFAFPPMMPTATSASAAAAAAA 82
Query: 565 NVVEGSLNTLSMSASSNLTCCL--MTASL---AKARMPPCQSALDTGSPVDIPNGSSCAT 401
+ + S ++ + S SS+L+ L M L RMP SA T +P D P+G T
Sbjct: 83 SPTQSSSSSAATSPSSDLSAFLNSMLGPLNLRTDERMPGTTSAAGTATPEDEPDGFDAVT 142
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 192 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 296
A N P A PPP++AP + P T+ P+ G
Sbjct: 88 AGNPPTPAQAGAPPPSIAPGTGSPPPATTTPPAPG 122
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 73 PPRRNPSLMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 231
PPRR PS + +SR + +P+ LG+ ++ +S+ H RR
Sbjct: 118 PPRRRPSRFSAPAASSRLSRLARAPSGRAVFSLGLAATSSPSPSVSRGKHRRR 170
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = +3
Query: 228 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQSRGHLVA 407
PPPN P L P++ P+ A SP + K D H AV+ + S + V
Sbjct: 61 PPPNAEPEAPPPPQLEVKAPAATLPPNPEAASPGSAK--DVHTAVKQVQWSAFATNSGVG 118
Query: 408 QLDPLGISTGD 440
DP G GD
Sbjct: 119 GDDPFGEFMGD 129
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 219 RRLAELRLSHCGKMHPKTRVRSLGRRAMH 133
RRLAEL LS C P+ R+R++ R A+H
Sbjct: 56 RRLAELSLSSC---CPRLRLRAVRRLALH 81
>11_01_0680 -
5554012-5554028,5555525-5555678,5555790-5555951,
5556130-5557148,5559808-5559835,5560996-5561079,
5561442-5561654,5562267-5562569
Length = 659
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 361 CRLSSGVTSRGVILWRNLTRWEYRPEIRCRALIGTAACEPSLTKLSLDN 507
CR S G S R + RW + C+A + PS +L+LDN
Sbjct: 24 CRFSLGGLSDFAADARRVDRWFRHAAVMCQARVLQLRLAPSGVQLALDN 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,684,245
Number of Sequences: 37544
Number of extensions: 549949
Number of successful extensions: 1961
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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