Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E11
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                120   2e-40
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             36   0.041
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         31   1.6  
SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)                   30   2.1  
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)                 30   2.7  
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   4.7  
SB_58968| Best HMM Match : TP2 (HMM E-Value=2)                         29   4.7  
SB_15684| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                29   6.3  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score =  120 bits (289), Expect(2) = 2e-40
 Identities = 65/133 (48%), Positives = 81/133 (60%)
 Frame = +3

Query: 48  VNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYT 227
           V   +  +  A EPFL+GSSS YVE MY +WL DP SVH SWDA+FRN + G  PG AY 
Sbjct: 7   VRPQQAAAVVAKEPFLSGSSSNYVEEMYASWLEDPKSVHRSWDAYFRNVSLGKSPGQAYY 66

Query: 228 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQSRGHLVA 407
           PPP L       V + + +PS+    +I+A       I++DHLAV ++IRSYQ RGH  A
Sbjct: 67  PPPVLG----KPVAVATAMPSAVDQSNITA-------IVEDHLAVYSMIRSYQIRGHRKA 115

Query: 408 QLDPLGISTGDPV 446
            LDPLG    D V
Sbjct: 116 MLDPLGEQDLDKV 128



 Score = 64.1 bits (149), Expect(2) = 2e-40
 Identities = 27/48 (56%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
 Frame = +3

Query: 522 EADMDRVFKLPSTTFIG-EKEKALPLREILNRLEQAYCNNIGIEFMFI 662
           E D+D+VF+LP++TFIG E   AL LR+I++RLE+ YC+++G++FMFI
Sbjct: 122 EQDLDKVFRLPNSTFIGGESATALTLRDIVDRLEKTYCHHVGLDFMFI 169



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +1

Query: 664 IPWK-QCNWIRQRMEPPNVTKMNADQKRLILARLTRSTGFENFLAK 798
           IP K +C+WIR++ E P    +  D+KR +LARL RSTGFE FLA+
Sbjct: 169 IPEKYKCDWIRKKFEMPGHDVLTRDEKRTLLARLVRSTGFEGFLAR 214


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 52  MPTG*RAPPRRNPSLMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 231
           +P G ++PP  +P L +P+    R     GSP+  P  R   + S  R +  SQ+P    
Sbjct: 256 IPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDFH 315

Query: 232 RP 237
           +P
Sbjct: 316 QP 317


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 281 ERCERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLD 117
           E C + + ++  R+ GR  VCG +  SVC+  E   P  +  V VG   +  G D
Sbjct: 355 ETCGKRVDMIATRKEGREHVCGEYKCSVCK--EVVPPDHLCYVTVGADALPKGGD 407


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 225 TPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 329
           TPPPN      +   LTSLVP+ G      AGS +
Sbjct: 386 TPPPNTVAGQTSAYQLTSLVPTQGTQVLSDAGSNV 420


>SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 180 FFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGM 302
           F R+  +  +P    +PPP   P   +  P  SL P++GGM
Sbjct: 35  FPRHQASFTEPSPDSSPPPPRTPVAPSTSPAVSLGPAAGGM 75


>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
          Length = 677

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 192 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAI 371
           AT    P   YTP P      ++ VPL  + P+ G +P+ +  SP  E  +  +    A+
Sbjct: 234 ATPTHSPLRLYTPSPAGRSQLQSPVPLRLMSPALGQVPATNTRSPFLESPLMMNARSPAV 293

Query: 372 IRS 380
            RS
Sbjct: 294 FRS 296


>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
          Length = 694

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +3

Query: 18  LNKPQTAAVSVN-ANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA 194
           LN+   A +S N A RL ++ ++ P +  S       + N  +  P+  H  W    R A
Sbjct: 42  LNRSMIARLSDNRAPRLGTNNSSYPGIRASWE-----INNKMVDSPSDFHHDW----RRA 92

Query: 195 TNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 317
            +    G A + PP   P   ++ P   LVP +   P ++A
Sbjct: 93  LDSLHQGHAPSRPPTPDPQPTHQNPSPGLVPIAIRDPDLTA 133


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 356 EVIVDYLLVYRGTC*NRRHSAARWHERCERDLILVVWREIGRRRVCGAWLSSVCRI 189
           +V V+Y   YRG    +    +R H R E  ++  + R   +R   G W  S+ R+
Sbjct: 140 KVCVEYHSFYRGKTEYQAIEESRTHARPEPKIVRTLSRRYSKRSDSGTWSRSLRRL 195


>SB_58968| Best HMM Match : TP2 (HMM E-Value=2)
          Length = 190

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 518 KSHVLSNDSFVSEGSHAAVPISARHRISGRYSQRVKLRHKMTPRLV 381
           + HV+S  S  S+GSHA  P+    + + +Y+   + R  + P+++
Sbjct: 73  RHHVISRRSLRSKGSHAE-PLKVPGKSTEQYTTSKRTRRSLDPKVI 117


>SB_15684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = -3

Query: 797 LARKFSNPVDLVRRARMSLFWSAFIFVTFGGSMRCRIQLHCFQGIYEHELNTDVVAVRLL 618
           LA + +    L++  R+    +++++V  GG+   R+   CF G+ +  ++ +   VR +
Sbjct: 30  LADRLARQFVLIQE-RVHSHGTSYVYVLIGGAFLSRVHPTCFTGLRKQGISPNPEKVRAI 88

Query: 617 QTI 609
           Q +
Sbjct: 89  QAL 91


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 204 AQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 317
           +QPG  Y PPP L   +K   P  SL   S  +P IS+
Sbjct: 452 SQPGYKYRPPPRL---DKGHTPNLSLYLQSFFLPKISS 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,408,920
Number of Sequences: 59808
Number of extensions: 591719
Number of successful extensions: 3308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3306
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)