Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E09
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    29   1.1  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   7.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   7.7  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 245 GVVHVSTDSTLYSLWLNIVLDSKADILGNWIGDVTTQDNMNFKIESTQTK 394
           G++ +  D+ +    LN V+  ++DI+GN I  +  +DN    +  ++TK
Sbjct: 178 GIMELLKDNKISVAGLNAVVLGRSDIVGNPISYLLRKDNATVTVCHSKTK 227


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +2

Query: 350 TQDNMNFKIESTQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALE 529
           TQ N  F +E +Q K N   A    F V+Y     A      +L+  E+ + +  +  + 
Sbjct: 165 TQQNNQFVMEPSQNKGNVNDANF--FEVEY-----ARNENMNKLSSSELISDDLLEDEIM 217

Query: 530 SPLSSGDSKPNR 565
            PLSSG+S P +
Sbjct: 218 KPLSSGESLPKK 229


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 558 RTDSSQLRLVDPKHNPIEDNKLLHPLDQQVD 650
           R DS  ++L+ PK N    + L+  L  Q+D
Sbjct: 606 RIDSETIKLLQPKSNSFSTSSLIQSLFLQLD 636


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 219 GVSYSKTFGHGEIGVLWSCVRTDSAKTSTT 130
           G  YSK+FG+  I   + C  +D  KT  T
Sbjct: 43  GWEYSKSFGNAYICTSFLCFHSDDFKTRFT 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,797
Number of Sequences: 5004
Number of extensions: 64761
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)