Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E09
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_15003| Best HMM Match : WAP (HMM E-Value=0.0036)                    30   2.0  
SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)                      29   3.6  
SB_48628| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52469| Best HMM Match : MSSP (HMM E-Value=0.54)                     29   4.7  
SB_50693| Best HMM Match : C2 (HMM E-Value=0)                          29   6.2  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 293 NIVLDSKADILGNWIGDVTTQDNMNFKIESTQTKINPGPATAVRFFVQYNTLN 451
           NI++ +   I+GN I   TT++N N  I  T +   P P+     +  Y+ +N
Sbjct: 58  NIIIVTNITIIGNVIVSNTTKNNTNTIIIITSSSAPPSPSYYHHLYRHYHHIN 110


>SB_15003| Best HMM Match : WAP (HMM E-Value=0.0036)
          Length = 230

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/63 (39%), Positives = 32/63 (50%)
 Frame = +2

Query: 8   FSKRRAQKTRVRGINRVGKQFFL*HTSCLRMVQIKMLGFVTVVLVLALSVRTQDQSTPIS 187
           FS RR QKT  R ++R G        S L M  +     V +VL LAL    Q Q+TP++
Sbjct: 62  FSARREQKTVRRRLDRQGAL-----DSALAMASLPRS--VMLVLFLALWTLAQGQTTPVT 114

Query: 188 PCP 196
            CP
Sbjct: 115 -CP 116


>SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)
          Length = 393

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 216 VSYSKTFGHGEIGVLWSCVRTDSAKTSTTVTKPSILICTIRKQLV 82
           +S S TF  GE+ ++W C           + KPS   C +R+  +
Sbjct: 345 LSGSSTFPEGELLLVWKCSEMKEGNEVVGIFKPSENSCYLRRSQI 389


>SB_48628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 628 IP*TNK*TP*ILTRG-RQKLKDRKFLLEDLR--IXFVRPQIPDTRTXSPDVR 774
           +P   +  P +L  G RQ L D + +L D+R  +  VR  +PD R   PDVR
Sbjct: 319 VPDVCREVPDVLVPGVRQVLPDVRRVLSDVRRVLPDVRQVLPDVRRVLPDVR 370


>SB_52469| Best HMM Match : MSSP (HMM E-Value=0.54)
          Length = 341

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 248 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 138
           +H +  PLT      KH GM  L   GPVC+ + + P
Sbjct: 12  KHVSMGPLTTGGPVCKHVGMGPLTTGGPVCKHVSMWP 48



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 248 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 138
           +H    PLT      KH GM  L   GPVC+ I + P
Sbjct: 275 KHVGMWPLTTGGPVCKHVGMGPLTTGGPVCKHIGMGP 311



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 248 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 138
           +H    PLT      KH GM  L   GPVC+ I + P
Sbjct: 290 KHVGMGPLTTGGPVCKHIGMGPLTTGGPVCKHIGMGP 326


>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
          Length = 1049

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 543 RAIQSRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVDPLNTDSRTPETE 686
           R  +  + + Q+ L  P H+ +ED+    P  Q + P +T  ++P+ +
Sbjct: 809 RISKKSSPNPQITLQQPTHDSLEDDGTQSPKTQSLKPQSTKPQSPKPQ 856


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
 Frame = -1

Query: 312 LLSRTILSHREYNVLSVETWTTPY-HLPASDPGVSYSKT-FGHG----EIGVLWSCV 160
           ++++T++ H EYN ++  +W T +  LP +   +S++ T F  G    E+  LW  V
Sbjct: 480 IITKTLVDHLEYNYVAKWSWKTYFLDLPITSLAMSFTATPFSCGTLCDELSRLWLLV 536


>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -1

Query: 384 VLSILKFM-LSCVVTS-PIQFPSISALLSRTILSHREYNVLSVETWTTPYHLPASDPGVS 211
           VLS   FM  SC+ +S PI    +  L + +  SH +   LSV             PGV 
Sbjct: 172 VLSSSPFMQASCLRSSNPICLTHMHTLTTPSCTSHSKLTALSVR----------QRPGVP 221

Query: 210 YSKTFGHGEIGVLWSCVRTD 151
           +S   G G   V W C+ T+
Sbjct: 222 WSDASGRGSNIVRWRCLGTE 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,138,181
Number of Sequences: 59808
Number of extensions: 496479
Number of successful extensions: 1477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)