Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E09
         (843 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ...    31   6.9  
U28686-1|AAB17212.1|  157|Homo sapiens RNPL protein.                   30   9.1  
BC006825-1|AAH06825.1|  157|Homo sapiens RNA binding motif (RNP1...    30   9.1  
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ...    30   9.1  

>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
            transcription factor protein.
          Length = 2781

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = +3

Query: 555  SRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVDPLNTDSRTPETE 686
            S++DSS LR+ DP H     NK L+P D+ +D ++   R+PET+
Sbjct: 1002 SQSDSSVLRMSDPSHT---TNK-LYPKDRVLDDVSI--RSPETK 1039


>U28686-1|AAB17212.1|  157|Homo sapiens RNPL protein.
          Length = 157

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 215 FHTRKHSGMVRLECFGPVCELIVLKPAQRSQSQAF*FAPFVN 90
           F+T + +       FGP+ E++V+K  +  +S+ F F  F N
Sbjct: 15  FNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56


>BC006825-1|AAH06825.1|  157|Homo sapiens RNA binding motif (RNP1,
           RRM) protein 3 protein.
          Length = 157

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 215 FHTRKHSGMVRLECFGPVCELIVLKPAQRSQSQAF*FAPFVN 90
           F+T + +       FGP+ E++V+K  +  +S+ F F  F N
Sbjct: 15  FNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56


>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
            transcription factor protein.
          Length = 2764

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +3

Query: 555  SRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVDPLNTDSRTPETE 686
            S +DSS LR+ DP H     NK L+P D+ +D ++   R+PET+
Sbjct: 1128 SESDSSVLRMSDPSHT---TNK-LYPKDRVLDDVSI--RSPETK 1165


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,099,899
Number of Sequences: 237096
Number of extensions: 2301704
Number of successful extensions: 5268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5268
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)