Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E09
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    27   0.16 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 251 LRHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVL 144
           L H     L   FH ++H G   ++ +GP   L+VL
Sbjct: 195 LSHAEYSMLLVYFHLQRHMGNFLIQVYGPCVLLVVL 230


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 57  SENNFFYNILVVYEW 101
           S NN  +++ V+YEW
Sbjct: 29  SANNLAHSMKVIYEW 43


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 594 KHNPIEDNKLLHPLDQQVDPLNTDSRTPE 680
           K + +  N L+ PLD+    +  + ++PE
Sbjct: 643 KEHVLAHNDLMSPLDEPAVHIKQEGQSPE 671


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 468 KRRGALFKVLYWTKNLTAVAG 406
           +RR    ++L WTKN+  V G
Sbjct: 12  ERRHIRRELLRWTKNMVFVVG 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,277
Number of Sequences: 438
Number of extensions: 4567
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)