Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E09
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent phos...    31   0.72 
At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent phos...    30   2.2  
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00...    30   2.2  
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD...    29   2.9  
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD...    29   2.9  
At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    29   5.1  

>At4g09520.1 68417.m01565 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase family protein /
           phosphoglyceromutase family protein contains similarity
           to 2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
           (BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
           (Swiss-Prot:Q59007) [Methanococcus jannaschii]; contains
           weak hit to Pfam profile PF01676: Metalloenzyme
           superfamily
          Length = 492

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 STPISPCPNVFEYETPGSEAGR 238
           S P++PCPNVFE    G + GR
Sbjct: 299 SAPLNPCPNVFEPAEDGHKPGR 320


>At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase-related /
           phosphoglyceromutase-related contains weak similarity to
           2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
           (BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
           (Swiss-Prot:Q59007) [Methanococcus jannaschii]
          Length = 495

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 173 STPISPCPNVF----EYETPGSEAGRWYGVVHV 259
           S P++PCPNVF    +   PG   G  +G +H+
Sbjct: 303 SAPLNPCPNVFVPGEDGHKPGRSDGYDFGFLHI 335


>At1g67390.1 68414.m07670 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 479

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 293 NIVLDSKADILGNWIGDVTTQDNMNFKIES-TQTKINPGPATAVRFFVQYNTLNKAPRLL 469
           N V+ +   +  NW  D+    NMN+ I S  Q K N G    V     Y    K+ +++
Sbjct: 284 NFVIKAPRLLFNNWTKDLEKVPNMNYNITSHAQEKKNIGHEFVVSGDASYLQKLKSLKVV 343

Query: 470 AIRLNGREI 496
               N RE+
Sbjct: 344 VDVTNSREV 352


>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 857

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 537 CLRAIQSRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVD 650
           CL+ + + ++ +  R +DPK + ++ + + +PL   VD
Sbjct: 787 CLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVD 824


>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 868

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 537 CLRAIQSRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVD 650
           CL+ + + ++ +  R +DPK + ++ + + +PL   VD
Sbjct: 798 CLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVD 835


>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 225 DPGVSYSKTFGHG-EIGVLWSCVRTDSAKTSTTVTKPSILICTIRKQLV 82
           DPG+ +SK+  H  +I +    +R + AK S  V+   IL+   RK+ +
Sbjct: 449 DPGIGFSKSVDHNLDIIMDLPKIREEMAKRSIAVSHAPILVGPSRKRFL 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,719
Number of Sequences: 28952
Number of extensions: 344247
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)