Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E06
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 93 6e-20
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.37
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 28 1.5
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 28 1.5
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 2.6
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 26 6.0
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 6.0
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 6.0
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 92.7 bits (220), Expect = 6e-20
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 4/212 (1%)
Frame = +3
Query: 141 RPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKS 320
+PEN L+ A+E + LD+ + AL +L E K+ + N LEPIM +++ELCV LRK
Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKR-SRNAQGFSLEPIMMRFIELCVHLRKG 65
Query: 321 HVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRMAEERTETARALSTQAVID-TDDLDNLGN 497
+AKEGL+ Y+N Q+ +V ++E V++ ++ +A +R + A+ + + ++ DDL+
Sbjct: 66 KIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLE---- 121
Query: 498 PGEHTPECSVRRRCPGPI*QNNTHTMGEIPLGILLPMPGAPSYECSCGNLGIMI---LPR 668
TPE + G + ++ T P L + N + + L
Sbjct: 122 -ATETPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIA 180
Query: 669 HGXSNXVXRYSXXTEFXKLCDXLXEHLEDICK 764
+ +Y TEF +LC+ L HL + K
Sbjct: 181 NSAFQFCLKYQRKTEFRRLCELLRSHLGNASK 212
Score = 66.9 bits (156), Expect = 3e-12
Identities = 26/51 (50%), Positives = 41/51 (80%)
Frame = +1
Query: 496 TPESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETL 648
TPESI++S VSG+ ++ R+DR ++TPW+KFLW++Y L++LR NA +E +
Sbjct: 125 TPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVM 175
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = -3
Query: 199 LAGLSKSMNSLARLRAFSGL*PYRAIFFISLSTSLTQFRRFYVGLGEKTEFLQHRPHTRQ 20
L GLS ++ + + +F + P + +F+ + ++ ++G+ EKT F + +
Sbjct: 687 LVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEA 746
Query: 19 CKTKI 5
C K+
Sbjct: 747 CYEKV 751
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 468 DTDDLDNL----GNPGEHTPECSVRRRCPGPI*QNNTHT 572
D D+LDNL G H P+ V R P PI + H+
Sbjct: 387 DQDELDNLTKVEGQSHSHNPKAPVIRNLPRPIYHQDLHS 425
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 594 FPKEFHPWCEYCSVRSVLGIFA*HCTQEYALRGCQGYP 481
F +EF W +C SVLG+ + Y G G P
Sbjct: 37 FKREFSAWTSFCVSFSVLGLLPSFASTMYYTTGYAGTP 74
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 161 FKGIFRSL-TVSRHFLYITFYFINTISSILCRFRRENRIPPAP 36
F I+R L V+ FL + YFI I IL ++++PP P
Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEP 626
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +1
Query: 499 PESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETLVS 654
P + L V+GE D S + + +K + + +C+ L + N E +++
Sbjct: 222 PTTATLDCVNGELYNDESAKELFRCIIKECVDIFFKCIPLFKNNEEAEKILN 273
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 587 FGNPTANAWSSFVRMLMW 640
FG P A W+ F++ L W
Sbjct: 170 FGTPDAEGWNEFLKCLEW 187
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 378 GSLEQVIRGYLRMAEERTETARALSTQAVIDTDDLDNL 491
GSLE + + Y+ +E + L +++D D++NL
Sbjct: 527 GSLETIEKTYVDTVDEFGNPVKVLIDNSMLDLTDMENL 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,557,394
Number of Sequences: 5004
Number of extensions: 77038
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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