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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E06
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)          115   6e-26
SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)                  33   0.23 
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)            31   1.2  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             31   1.2  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  29   3.7  
SB_21478| Best HMM Match : Branch (HMM E-Value=0)                      29   4.9  
SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)                 29   6.5  
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 28   8.5  
SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)                    28   8.5  

>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score =  115 bits (276), Expect = 6e-26
 Identities = 82/226 (36%), Positives = 113/226 (50%), Gaps = 7/226 (3%)
 Frame = +3

Query: 174 FMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYR 353
           F+++ K   ALD L +V ++KK    W   + EPI+FKYLELCVDLR+SHVAKEGL+QY+
Sbjct: 2   FIEVGKKEPALDALYDVIKSKKHR-TWQNKIHEPILFKYLELCVDLRRSHVAKEGLYQYK 60

Query: 354 NMFQSVNVGSLEQVIRGYLRMAEERTETARALS---TQAVIDTD-DLDNLGNPGEHTPEC 521
            + Q VN+ SLE VIR +L++AE R   A+  S     A +D D D+++L      TPE 
Sbjct: 61  LICQQVNIASLEDVIRYFLKLAESRAVEAQEDSRKEASAELDEDVDIEDLDQ--IQTPES 118

Query: 522 SVRRRCPGPI*QNNTHTMGEIPLGILLPMPGAPSYECSCGNLGIMILPRHGXS---NXVX 692
            +     G   Q+ T  +   P    L        E    N+ +  L             
Sbjct: 119 LLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKLYHETAQQAFKFCL 178

Query: 693 RYSXXTEFXKLCDXLXEHLEDICKPTVQPVXLAFXTRNSXXXNPET 830
           +Y+  TEF KLCD L  HL    K   QP  +     +S   + ET
Sbjct: 179 KYTRRTEFRKLCDNLRNHLNVTLKHQGQPNSVNLNNPDSIQMHLET 224



 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 37/53 (69%), Positives = 41/53 (77%)
 Frame = +1

Query: 490 LATPESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETL 648
           + TPES+LLS VSGED QDR+DR  LTPWVKFLWE+Y   LELLR N  VE L
Sbjct: 113 IQTPESLLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKL 165


>SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)
          Length = 152

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +3

Query: 102 VESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIM 281
           VE+D K++ +     E  LK   E  +LD   +A D +QE  ++   A N +   L+ I 
Sbjct: 78  VENDAKELQKNMDEEEQELKTEEE-KELDDEKQARDKIQEAIKHNSEAMNKARKFLQDIE 136

Query: 282 FKYLELCVDLRKSHV 326
               +   D+ KS+V
Sbjct: 137 EGIEKFHQDIEKSNV 151


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 138 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 305
           QRP         F  L  P RALD L E F+ +  A     N+ E +LE + F+ L L +
Sbjct: 547 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 606

Query: 306 DLRKSHVAKEGLFQYR 353
              K  V  +G F  R
Sbjct: 607 ---KGDVIIQGDFNAR 619


>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
          Length = 1163

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 138 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 305
           QRP         F  L  P RALD L E F+ +  A     N+ E +LE + F+ L L +
Sbjct: 670 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 729

Query: 306 DLRKSHVAKEGLFQYR 353
              K  V  +G F  R
Sbjct: 730 ---KGDVIIQGDFNAR 742


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 138 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 305
           QRP         F  L  P RALD L E F+ +  A     N+ E +LE + F+ L L +
Sbjct: 498 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 557

Query: 306 DLRKSHVAKEGLFQYR 353
              K  V  +G F  R
Sbjct: 558 ---KGDVIIQGDFNAR 570


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = -3

Query: 298 SSKYLNMIGSRTDSDQL*AHFLLRKTSCKVSRALAGLSKSMNSLARLRAFSGL*PYRAIF 119
           SS  + M  ++T +DQ    F+++     V   +AGL KS  S   + + S L      F
Sbjct: 106 SSPSIGMSLAKTSADQAPKSFVIKGGEFDVPEEMAGLLKSDPSGGSVISQSTLTVANPFF 165

Query: 118 FISLSTSLTQFRRFYVGLGEKTE 50
           + + S S T+ R   V L  K E
Sbjct: 166 YSNDSNSTTRVRSPVVSLTYKME 188


>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
          Length = 666

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 471 TDDLDNLGNPGEHTPECSVRRRCP 542
           T+DLDN+ N GE T    V+ R P
Sbjct: 139 TEDLDNMRNEGEETQHLPVKGRSP 162


>SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)
          Length = 387

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 120 KMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLEL 299
           ++  Y  RP     R      L+K  + LD ++EV     W    S+ V+ P   + + L
Sbjct: 13  RITHYNIRPIPFGLRGKVNQKLEK-LKNLDIIEEVAGPTPWV---SQVVIVPKPSREIRL 68

Query: 300 CVDLRKSHVAKEGLFQYRNMFQSVN 374
           CVD+R   +A E + + R+   SV+
Sbjct: 69  CVDMR---MANEAVLRERHPIPSVD 90


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +3

Query: 93  VNEVESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLE 272
           V E  +D    +RY  R  +AL++    +  DK        ++VF+ K          LE
Sbjct: 189 VPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKEKTQE-EQVFKEKAMELVVDVDGLE 247

Query: 273 PIMFKYLELCVDLRKSHVAK 332
               K L+LC ++R+  V +
Sbjct: 248 ETFEKQLKLCPEVRELKVLR 267


>SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)
          Length = 632

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 120 KMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPI 278
           K   YG  P++  +     + LD   R  DT Q    NK+  Y   E +LE +
Sbjct: 562 KTKMYGSIPDDLKRFLGTEVTLDGICRVFDTFQYTSLNKRLMYLLCEGMLEQL 614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,388,030
Number of Sequences: 59808
Number of extensions: 604849
Number of successful extensions: 1360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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