BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_E06 (864 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 115 6e-26 SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7) 33 0.23 SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024) 31 1.2 SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051) 31 1.2 SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.7 SB_21478| Best HMM Match : Branch (HMM E-Value=0) 29 4.9 SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21) 29 6.5 SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024) 28 8.5 SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21) 28 8.5 >SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) Length = 1217 Score = 115 bits (276), Expect = 6e-26 Identities = 82/226 (36%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Frame = +3 Query: 174 FMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYR 353 F+++ K ALD L +V ++KK W + EPI+FKYLELCVDLR+SHVAKEGL+QY+ Sbjct: 2 FIEVGKKEPALDALYDVIKSKKHR-TWQNKIHEPILFKYLELCVDLRRSHVAKEGLYQYK 60 Query: 354 NMFQSVNVGSLEQVIRGYLRMAEERTETARALS---TQAVIDTD-DLDNLGNPGEHTPEC 521 + Q VN+ SLE VIR +L++AE R A+ S A +D D D+++L TPE Sbjct: 61 LICQQVNIASLEDVIRYFLKLAESRAVEAQEDSRKEASAELDEDVDIEDLDQ--IQTPES 118 Query: 522 SVRRRCPGPI*QNNTHTMGEIPLGILLPMPGAPSYECSCGNLGIMILPRHGXS---NXVX 692 + G Q+ T + P L E N+ + L Sbjct: 119 LLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKLYHETAQQAFKFCL 178 Query: 693 RYSXXTEFXKLCDXLXEHLEDICKPTVQPVXLAFXTRNSXXXNPET 830 +Y+ TEF KLCD L HL K QP + +S + ET Sbjct: 179 KYTRRTEFRKLCDNLRNHLNVTLKHQGQPNSVNLNNPDSIQMHLET 224 Score = 80.6 bits (190), Expect = 2e-15 Identities = 37/53 (69%), Positives = 41/53 (77%) Frame = +1 Query: 490 LATPESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETL 648 + TPES+LLS VSGED QDR+DR LTPWVKFLWE+Y LELLR N VE L Sbjct: 113 IQTPESLLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKL 165 >SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7) Length = 152 Score = 33.5 bits (73), Expect = 0.23 Identities = 22/75 (29%), Positives = 36/75 (48%) Frame = +3 Query: 102 VESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIM 281 VE+D K++ + E LK E +LD +A D +QE ++ A N + L+ I Sbjct: 78 VENDAKELQKNMDEEEQELKTEEE-KELDDEKQARDKIQEAIKHNSEAMNKARKFLQDIE 136 Query: 282 FKYLELCVDLRKSHV 326 + D+ KS+V Sbjct: 137 EGIEKFHQDIEKSNV 151 >SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1200 Score = 31.1 bits (67), Expect = 1.2 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = +3 Query: 138 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 305 QRP F L P RALD L E F+ + A N+ E +LE + F+ L L + Sbjct: 547 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 606 Query: 306 DLRKSHVAKEGLFQYR 353 K V +G F R Sbjct: 607 ---KGDVIIQGDFNAR 619 >SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024) Length = 1163 Score = 31.1 bits (67), Expect = 1.2 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = +3 Query: 138 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 305 QRP F L P RALD L E F+ + A N+ E +LE + F+ L L + Sbjct: 670 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 729 Query: 306 DLRKSHVAKEGLFQYR 353 K V +G F R Sbjct: 730 ---KGDVIIQGDFNAR 742 >SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051) Length = 891 Score = 31.1 bits (67), Expect = 1.2 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = +3 Query: 138 QRPENALKRANEFMDLDKPARALDTLQEVFRNKKWA----YNWSESVLEPIMFKYLELCV 305 QRP F L P RALD L E F+ + A N+ E +LE + F+ L L + Sbjct: 498 QRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGPANGRCNNYEEDILEELEFEILRLSL 557 Query: 306 DLRKSHVAKEGLFQYR 353 K V +G F R Sbjct: 558 ---KGDVIIQGDFNAR 570 >SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0) Length = 1627 Score = 29.5 bits (63), Expect = 3.7 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = -3 Query: 298 SSKYLNMIGSRTDSDQL*AHFLLRKTSCKVSRALAGLSKSMNSLARLRAFSGL*PYRAIF 119 SS + M ++T +DQ F+++ V +AGL KS S + + S L F Sbjct: 106 SSPSIGMSLAKTSADQAPKSFVIKGGEFDVPEEMAGLLKSDPSGGSVISQSTLTVANPFF 165 Query: 118 FISLSTSLTQFRRFYVGLGEKTE 50 + + S S T+ R V L K E Sbjct: 166 YSNDSNSTTRVRSPVVSLTYKME 188 >SB_21478| Best HMM Match : Branch (HMM E-Value=0) Length = 666 Score = 29.1 bits (62), Expect = 4.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 471 TDDLDNLGNPGEHTPECSVRRRCP 542 T+DLDN+ N GE T V+ R P Sbjct: 139 TEDLDNMRNEGEETQHLPVKGRSP 162 >SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21) Length = 387 Score = 28.7 bits (61), Expect = 6.5 Identities = 24/85 (28%), Positives = 40/85 (47%) Frame = +3 Query: 120 KMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLEL 299 ++ Y RP R L+K + LD ++EV W S+ V+ P + + L Sbjct: 13 RITHYNIRPIPFGLRGKVNQKLEK-LKNLDIIEEVAGPTPWV---SQVVIVPKPSREIRL 68 Query: 300 CVDLRKSHVAKEGLFQYRNMFQSVN 374 CVD+R +A E + + R+ SV+ Sbjct: 69 CVDMR---MANEAVLRERHPIPSVD 90 >SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024) Length = 414 Score = 28.3 bits (60), Expect = 8.5 Identities = 21/80 (26%), Positives = 35/80 (43%) Frame = +3 Query: 93 VNEVESDIKKMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLE 272 V E +D +RY R +AL++ + DK ++VF+ K LE Sbjct: 189 VPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKEKTQE-EQVFKEKAMELVVDVDGLE 247 Query: 273 PIMFKYLELCVDLRKSHVAK 332 K L+LC ++R+ V + Sbjct: 248 ETFEKQLKLCPEVRELKVLR 267 >SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21) Length = 632 Score = 28.3 bits (60), Expect = 8.5 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +3 Query: 120 KMARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPI 278 K YG P++ + + LD R DT Q NK+ Y E +LE + Sbjct: 562 KTKMYGSIPDDLKRFLGTEVTLDGICRVFDTFQYTSLNKRLMYLLCEGMLEQL 614 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 27,388,030 Number of Sequences: 59808 Number of extensions: 604849 Number of successful extensions: 1360 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1291 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1359 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2467263854 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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