Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E06
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...   103   1e-22
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    31   0.75 
At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 / cy...    31   1.3  
At4g27440.1 68417.m03944 protochlorophyllide reductase B, chloro...    29   4.0  
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea...    28   7.0  
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    28   9.2  
At5g54190.1 68418.m06747 protochlorophyllide reductase A, chloro...    28   9.2  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score =  103 bits (248), Expect = 1e-22
 Identities = 55/123 (44%), Positives = 83/123 (67%), Gaps = 2/123 (1%)
 Frame = +3

Query: 123 MARYGQRPENALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKYLELC 302
           MA +  +PENALKRA+E +++ +   AL  L ++  +K++   W +  LE IMFKYL+LC
Sbjct: 1   MANFA-KPENALKRADELINVGQKQDALQALHDLITSKRYRA-WQKP-LEKIMFKYLDLC 57

Query: 303 VDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRMAEERTETAR--ALSTQAVIDTD 476
           VDL++   AK+GL QYR + Q VNV SLE+VI+ +L +A ++ E AR  A + +  +D D
Sbjct: 58  VDLKRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVD 117

Query: 477 DLD 485
           DL+
Sbjct: 118 DLE 120



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 29/50 (58%), Positives = 37/50 (74%)
 Frame = +1

Query: 499 PESILLSAVSGEDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETL 648
           PE + LS VSGE  +DRSDR ++TPW KFLWE+Y   LE+LR N+ +E L
Sbjct: 125 PEDLQLSIVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEAL 174


>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
 Frame = -3

Query: 496 LPRLSRSSVSMTACVDKALAVSVRSSAMRR*PLITCSKDPTLTDWNMFLYWNRPSFAT*D 317
           LP L +SSVS  +   K ++    S + +  P+   S+  +LT    F      S A   
Sbjct: 116 LPELRKSSVSSLSA--KTVSKPSLSESKKSVPVSPGSR--SLTKSTGFSLSKPESSARPA 171

Query: 316 LRRSTQS----SKYLNMIGSRTDSDQL*AHFLLRKTSCKVSRALAGLSKSMNSLARLRAF 149
           +  S  S    S  ++  GSRT S +L +     +T  KVS   AG S S++S  R ++F
Sbjct: 172 MSVSVSSKRAPSSSVDSSGSRTSSGRLHSTLTSGRTVSKVSSPSAGSSPSVSSSIRSKSF 231

Query: 148 S 146
           S
Sbjct: 232 S 232


>At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 /
           cytokinin synthase (IPT1) identical to adenylate
           isopentenyltransferase (IPT1) [Arabidopsis thaliana]
           GI:14279054
          Length = 357

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 93  VNEVESDIKKMARYGQRPENALKRAN-EFMDLDKPARALDTLQEVFRNKKWAYNWSESVL 269
           V++++ +   +A+   +    LK A  E   +D  A     + +    KKW  NW E VL
Sbjct: 284 VDDIKRNTWTLAKRQVKKIEMLKDAGWEIERVDATASFKAVMMKSSSEKKWRENWEEQVL 343

Query: 270 EP 275
           EP
Sbjct: 344 EP 345


>At4g27440.1 68417.m03944 protochlorophyllide reductase B,
           chloroplast / PCR B / NADPH-protochlorophyllide
           oxidoreductase B (PORB) identical to SP:P21218
           protochlorophyllide reductase B, chloroplast precursor
           (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B) [Arabidopsis thaliana]
          Length = 401

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -3

Query: 319 DLRRSTQSSKYLNMIGSRTDSDQL*AHFLLRKTSCKVSRALAGLSKSMNSLARLRA--FS 146
           DL++S   SK L ++GS T +    A  +  K +    R LAG    +NS A +    F 
Sbjct: 212 DLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFD 271

Query: 145 GL*PYRAIFFISLSTSLTQFRRFYVGLG 62
           G   Y+     ++ T     RRF+   G
Sbjct: 272 GAKAYKDSKVCNMLTMQEFHRRFHEETG 299


>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to L. erythrorhizon LEC14B, GenBank accession
           number Q40153
          Length = 493

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 150 NALKRANEFMDLDKPARALDTLQEVFRNKKWAYNWSESVLEPIMFKY-LELCVDLRKSH 323
           N   +  +  D+ K + +     EV RN +W Y W +   E    K+ L+  V   K H
Sbjct: 336 NGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRWMDYPTEARDLKHPLDQSVSTYKGH 394


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 443 PGCFCAFLCHAEIASYNL 390
           PGCFC   CH  IA +++
Sbjct: 308 PGCFCCRACHKPIAIHDI 325


>At5g54190.1 68418.m06747 protochlorophyllide reductase A,
           chloroplast / PCR A / NADPH-protochlorophyllide
           oxidoreductase A (PORA) identical to SP:Q42536
           protochlorophyllide reductase A, chloroplast precursor
           (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A) [Arabidopsis thaliana]
          Length = 405

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = -3

Query: 319 DLRRSTQSSKYLNMIGSRTDSDQL*AHFLLRKTSCKVSRALAGLSKSMNSLARLRA--FS 146
           DL+ S   SK L ++GS T +    A  +  K +    R LAG    +NS A +    F 
Sbjct: 216 DLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFV 275

Query: 145 GL*PYRAIFFISLSTSLTQFRRFYVGLG 62
           G   Y+     ++ T     RRF+   G
Sbjct: 276 GAKAYKDSKVCNMLTMQEFHRRFHEDTG 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,946,086
Number of Sequences: 28952
Number of extensions: 420572
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)