Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E02
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.3  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   7.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   7.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   7.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.3  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 681 LHVSSXSTGTWXXLLK-PHTXXCXXYAYPLLTC 776
           +H SS  TG W  L+    T  C  YA+   +C
Sbjct: 123 IHTSSYMTGIWVWLINISATYIC--YAFGKFSC 153


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 681 LHVSSXSTGTWXXLLK-PHTXXCXXYAYPLLTC 776
           +H SS  TG W  L+    T  C  YA+   +C
Sbjct: 356 IHTSSYMTGIWVWLINISATYIC--YAFGKFSC 386


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 681 LHVSSXSTGTWXXLLK-PHTXXCXXYAYPLLTC 776
           +H SS  TG W  L+    T  C  YA+   +C
Sbjct: 356 IHTSSYMTGIWVWLINISATYIC--YAFGKFSC 386


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 488 LSCQFYQSEEVTGVTR*ESHTPSLARSPASVV 583
           +SC  YQ+ E   V   ES  P +    A+ V
Sbjct: 369 VSCTHYQNPEYISVVNPESPYPQIGSERATPV 400


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 323 MMRFLRSCLYRNKHVPDSAHVSRHL 397
           +  ++   L + K  PD A + RHL
Sbjct: 43  LKNYVNCLLEKGKCTPDGAELKRHL 67


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 567 HRQVWFRNSPADSCPSWYWYCV 632
           HR  +FR     +   W+W+ V
Sbjct: 192 HRLAYFREDLGINLHHWHWHLV 213


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 486 KDNSASNGSGDFLAALHTQTNMTVVVANGNK 394
           K NS +NGS D +      ++    + NG+K
Sbjct: 279 KPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 694 ELTCSNPVHQP 662
           E TC  PVH+P
Sbjct: 91  EPTCDEPVHRP 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,834
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)