Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E02
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   218   7e-58
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    28   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  218 bits (533), Expect = 7e-58
 Identities = 92/125 (73%), Positives = 114/125 (91%)
 Frame = +1

Query: 322 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 501
           NDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS+
Sbjct: 76  NDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSI 135

Query: 502 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDC 681
           +P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ L +AG++DC
Sbjct: 136 MPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDC 195

Query: 682 YTSAR 696
           YT +R
Sbjct: 196 YTQSR 200



 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 30/45 (66%), Positives = 41/45 (91%)
 Frame = +3

Query: 174 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFL 308
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL 72


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 26/110 (23%), Positives = 47/110 (42%)
 Frame = +1

Query: 349 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 528
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 529 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQD 678
                  TV   +  K  +V + L   P G G+   P+  ++   AG++D
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKD 337


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 171 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 46
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,469
Number of Sequences: 5004
Number of extensions: 60038
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)