Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E02
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 231 5e-61
07_01_0756 + 5819367-5820038,5820847-5821005 228 4e-60
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 94 1e-19
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.7
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 29 6.2
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 6.2
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 8.1
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970... 28 8.1
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 231 bits (565), Expect = 5e-61
Identities = 103/124 (83%), Positives = 118/124 (95%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+
Sbjct: 87 DEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVV 146
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG++D +
Sbjct: 147 PVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVF 206
Query: 685 TSAR 696
TS+R
Sbjct: 207 TSSR 210
Score = 63.7 bits (148), Expect = 2e-10
Identities = 24/42 (57%), Positives = 37/42 (88%)
Frame = +3
Query: 174 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 299
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE 79
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 228 bits (558), Expect = 4e-60
Identities = 102/124 (82%), Positives = 117/124 (94%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+
Sbjct: 90 DEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVV 149
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG++D +
Sbjct: 150 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVF 209
Query: 685 TSAR 696
TS+R
Sbjct: 210 TSSR 213
Score = 63.7 bits (148), Expect = 2e-10
Identities = 25/42 (59%), Positives = 37/42 (88%)
Frame = +3
Query: 174 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 299
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE 82
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 93.9 bits (223), Expect = 1e-19
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Frame = +1
Query: 394 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 570
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 571 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCYTSAR 696
K GSVTVR++ P G+ +V+ VPKK+L AG++D +TS+R
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSR 98
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 322 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 501
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 502 LPV 510
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 456 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 340
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 265 FLYQSKNSRSLISSSARPXNDEVLKIMPVQKQTRAGQRTRFK 390
F+Y KNSR ++ +S P +D+ + ++ K GQ+ + K
Sbjct: 262 FMY--KNSREILDTSGGPRDDKWIFVLSTSKNLYVGQKKKGK 301
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 672 YTSHXKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 559
Y + ++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 129 DRHGLYLHRVIRIRRENRHVHRLEQRPP 46
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>01_06_1221 -
35495427-35496542,35496650-35496839,35496988-35497061,
35497407-35497573,35497685-35498018
Length = 626
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +2
Query: 224 SRRKNRQTREHLLVFFTNQRIRDH*FLPRPVPXMMRFLRSCLYRNKHVPDSAHVSRHLLP 403
S R R H + T + D +PRPV R+ ++ +H+P + +S +++
Sbjct: 275 SLRTIHTVRHHQVAAETLRSFSDVDAMPRPVMSFDDRRRTQVFLREHIPSTFAISGYVVL 334
Query: 404 LATTTVIL 427
+TV++
Sbjct: 335 ATVSTVVI 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,338,105
Number of Sequences: 37544
Number of extensions: 456314
Number of successful extensions: 1264
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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