BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_E02 (845 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 234 5e-62 U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 29 3.1 U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 28 9.6 AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 28 9.6 >U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal protein, small subunitprotein 2 protein. Length = 272 Score = 234 bits (573), Expect = 5e-62 Identities = 109/138 (78%), Positives = 120/138 (86%) Frame = +1 Query: 295 LISSSARPXNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 474 +I + DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRG Sbjct: 90 IIDALCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRG 149 Query: 475 AIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKL 654 AI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKL Sbjct: 150 AIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKL 209 Query: 655 LXMAGVQDCYTSARXQLA 708 L MAG++DCYT+A+ A Sbjct: 210 LHMAGIEDCYTAAKGSTA 227 Score = 65.3 bits (152), Expect = 5e-11 Identities = 31/41 (75%), Positives = 33/41 (80%) Frame = +3 Query: 177 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 299 E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID 92 >U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical protein F55F8.9 protein. Length = 477 Score = 29.5 bits (63), Expect = 3.1 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -3 Query: 666 SHXKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 562 +H K + +N RR+ +R +N+ YG+TL GDL Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251 >U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synthetase protein 1 protein. Length = 441 Score = 27.9 bits (59), Expect = 9.6 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 10 CLTGLSEPIVQQWRTLLQPVDVA 78 CLT +E +VQ WR+LL P D + Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166 >AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA synthetase protein. Length = 441 Score = 27.9 bits (59), Expect = 9.6 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 10 CLTGLSEPIVQQWRTLLQPVDVA 78 CLT +E +VQ WR+LL P D + Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,387,619 Number of Sequences: 27780 Number of extensions: 362033 Number of successful extensions: 996 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 926 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 994 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2098003600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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