Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_E02
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   234   5e-62
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   3.1  
U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    28   9.6  
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    28   9.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  234 bits (573), Expect = 5e-62
 Identities = 109/138 (78%), Positives = 120/138 (86%)
 Frame = +1

Query: 295 LISSSARPXNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 474
           +I +      DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRG
Sbjct: 90  IIDALCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRG 149

Query: 475 AIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKL 654
           AI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKL
Sbjct: 150 AIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKL 209

Query: 655 LXMAGVQDCYTSARXQLA 708
           L MAG++DCYT+A+   A
Sbjct: 210 LHMAGIEDCYTAAKGSTA 227



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/41 (75%), Positives = 33/41 (80%)
 Frame = +3

Query: 177 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 299
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID 92


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 666 SHXKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 562
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  CLTGLSEPIVQQWRTLLQPVDVA 78
           CLT  +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  CLTGLSEPIVQQWRTLLQPVDVA 78
           CLT  +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,619
Number of Sequences: 27780
Number of extensions: 362033
Number of successful extensions: 996
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)