Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_E02
(845 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 233 1e-61
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 233 1e-61
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 233 1e-61
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 233 1e-61
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 233 1e-61
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 233 1e-61
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 67 2e-11
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 33 0.32
At5g20600.1 68418.m02446 expressed protein 31 0.96
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 3.9
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 5.1
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 5.1
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.8
At3g01450.1 68416.m00069 expressed protein 28 6.8
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 9.0
At3g63100.1 68416.m07087 glycine-rich protein 28 9.0
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 9.0
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 9.0
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 233 bits (570), Expect = 1e-61
Identities = 105/124 (84%), Positives = 117/124 (94%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 98 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 157
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG+ D +
Sbjct: 158 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 217
Query: 685 TSAR 696
TS+R
Sbjct: 218 TSSR 221
Score = 68.5 bits (160), Expect = 5e-12
Identities = 28/47 (59%), Positives = 39/47 (82%)
Frame = +3
Query: 180 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSL 320
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTL 96
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 233 bits (570), Expect = 1e-61
Identities = 105/124 (84%), Positives = 117/124 (94%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG+ D +
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Query: 685 TSAR 696
TS+R
Sbjct: 217 TSSR 220
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +3
Query: 180 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSL 320
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTL 95
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 233 bits (570), Expect = 1e-61
Identities = 105/124 (84%), Positives = 117/124 (94%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG+ D +
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Query: 685 TSAR 696
TS+R
Sbjct: 217 TSSR 220
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +3
Query: 180 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSL 320
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTL 95
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 233 bits (570), Expect = 1e-61
Identities = 105/124 (84%), Positives = 117/124 (94%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG+ D +
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Query: 685 TSAR 696
TS+R
Sbjct: 217 TSSR 220
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +3
Query: 180 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSL 320
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTL 95
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 233 bits (570), Expect = 1e-61
Identities = 105/124 (84%), Positives = 117/124 (94%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG+ D +
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Query: 685 TSAR 696
TS+R
Sbjct: 217 TSSR 220
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +3
Query: 180 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSL 320
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTL 95
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 233 bits (569), Expect = 1e-61
Identities = 103/124 (83%), Positives = 118/124 (95%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 89 DEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVV 148
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQDCY 684
P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+L AG+ D +
Sbjct: 149 PIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 208
Query: 685 TSAR 696
TS+R
Sbjct: 209 TSSR 212
Score = 77.0 bits (181), Expect = 1e-14
Identities = 32/47 (68%), Positives = 42/47 (89%)
Frame = +3
Query: 180 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSL 320
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSL 87
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 66.9 bits (156), Expect = 2e-11
Identities = 36/118 (30%), Positives = 67/118 (56%)
Frame = +1
Query: 325 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 504
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 505 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQD 678
V + K T P + G G+ V L PA GTG+++ + +L MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/116 (24%), Positives = 52/116 (44%)
Frame = +1
Query: 331 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 510
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 511 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMAGVQD 678
R + HT+ + + L PAP TG+ + V K +L +AG ++
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKN 470
>At5g20600.1 68418.m02446 expressed protein
Length = 532
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 298 ISSSARPXNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI-RG 474
I ++RP NDEV + +PV ++ ++ K VA G ++ GL KCSK ++ +G
Sbjct: 305 IVEASRPGNDEVPESVPV-SESNTNVVSKSKKIVANGSSSKKKGL-KKCSKTKKDSVKKG 362
Query: 475 AII 483
A++
Sbjct: 363 AVM 365
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 165 HDHGRDHDRVHEDRHGLYLH 106
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 487 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMA 666
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 667 GVQ 675
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 487 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLXMA 666
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 667 GVQ 675
GV+
Sbjct: 257 GVE 259
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 391 AFVAIGDNNGHIGLGVKCSKE 453
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 554 TVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 375
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 374 CPARVCF 354
A CF
Sbjct: 218 AKASTCF 224
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 235 KSTNSRAFTCFLYQSKNSRSLISSSARPXNDEVLKI 342
K+T S F+ N RSLI+SSA P + V +
Sbjct: 167 KNTKSSRTKSFIQALSNMRSLITSSASPIDKRVFSL 202
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 159 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 67
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 165 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 61
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 547 HTVPCKVTGKCGSVTVRL 600
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,542,248
Number of Sequences: 28952
Number of extensions: 341883
Number of successful extensions: 872
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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