Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D23
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 4e-22
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 33 0.30
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31) 31 1.2
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 31 1.2
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 30 2.8
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 29 6.4
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) 29 6.4
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018) 28 8.5
>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 102 bits (244), Expect = 4e-22
Identities = 52/109 (47%), Positives = 67/109 (61%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRXVIRP 613
K +P+K+HPKFNFVGKLLGP+GNT K+LQ T KM++LG+GSMRD++KEEELR P
Sbjct: 104 KVFIPVKDHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDP 163
Query: 614 *VLSSS*RSHVEISAIAPPAXGSRXELHMHLAEVKKXLSAGIXXETXME 760
HV I APP + L + + E+KK L + E E
Sbjct: 164 KYAHLGEELHVLIEVEAPPGQ-AHARLGIAIEEIKKYLIPEMNDEIHQE 211
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 58.4 bits (135), Expect = 7e-09
Identities = 22/51 (43%), Positives = 39/51 (76%)
Frame = +2
Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 574
K Q K ++P E+P+ NF+G L+GP+GNT+K ++++T K+ + G+GS++D
Sbjct: 100 KIQDKVMIPQDENPEVNFIGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKD 150
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 33.1 bits (72), Expect = 0.30
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +3
Query: 180 KRNTTQGKPEELDQNGEEGIKIN---EKAGEYMR-ELLSEKIKLNNSKFPLSMKLIDQEV 347
KR + K E++Q EE EK E MR E E++K + +KF +M + + +V
Sbjct: 423 KRGCEEEKDSEIEQLREELRTTRDDFEKECERMRGEFQEERVK-DYAKFCTAMAVRNAQV 481
Query: 348 TKVQASGRITKDSKYVDVFRVQTNQSH 428
++Q + +T K ++VFR ++ + +
Sbjct: 482 LEIQRAELLTDHEKEMEVFREESQRDY 508
>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
Length = 353
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 251
D NG+ SGD + ++T GKP + + E G KI +
Sbjct: 11 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 47
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 251
D NG+ SGD + ++T GKP + + E G KI +
Sbjct: 289 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 325
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 377 QGLKICGCVPCPNQPKSQLKFLVPIKEHPKFNFVGKLLGPKGN 505
+G+K GCV P P ++K L+ I K FVG + +GN
Sbjct: 137 RGVKFAGCVHFPPVPGCEIKVLLLIYSPKKRAFVGLIPHDQGN 179
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 383 LKICGCVPCPNQPKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLC 538
L +C CPN+P+ L+ V + K NF G + + E+TLC
Sbjct: 13 LSLCNYAGCPNKPRDSLRCSVAFCDQCKVNFYNVTTGEEVDCG---PEETLC 61
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 29.5 bits (63), Expect = 3.7
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Frame = +3
Query: 120 FDLIKMADKYDKNGYNSGDFKRNTTQGK-PEELDQN---GEEGIKINEKAGEYMRELLSE 287
F + YD G S D ++ TT+GK PE + +N G G + E + + + SE
Sbjct: 659 FQTLDRKGGYDNPGQASDDDEKETTRGKAPEPIYENTKDGRCGSAVYENSNVALEAVTSE 718
Query: 288 KIKLNNSK-FPLS-MKLIDQEVTKVQASGRITKDSKYV 395
+ L K F LS +L +EV V + + YV
Sbjct: 719 GVGLAQVKCFNLSPEELESREVIPVDIAFDELPEKYYV 756
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 309 KFPLSMKLIDQEVTKVQASGRITKDSK 389
K+ L M L+++ +T+V A GRIT+D +
Sbjct: 764 KYGLRMSLLERLMTRVAAYGRITEDEE 790
>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
Length = 926
Score = 28.7 bits (61), Expect = 6.4
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 150 DKNGYNSGDFKRNTTQGKPEELDQN-GEEGIKINEKAG-EYMREL-LSEKIKLNNSKFPL 320
D NGYN + NT Q + E +K+ A Y ++ I NN+ P+
Sbjct: 502 DMNGYNEVAARNNTAQALSTAIKLRVNNEFVKVTVDAWYRYSASFQMAGVITANNTSTPV 561
Query: 321 SMKLIDQEVTKVQASGRITK 380
S +I E KV A R K
Sbjct: 562 SRSIISLEGQKVLAVRRSKK 581
>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
Length = 786
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 135 MADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKI-KLNNSK 311
+A+ D + G+ + TQ EE+ Q E +K E+ R+ E++ K K
Sbjct: 310 LAESLDPIFFVLGNQSNSETQEDLEEMRQ--AEKVKRREEKARLARQAAIEELQKKREEK 367
Query: 312 FPLSMKLIDQEVTKVQASGRITK 380
+ + + E+ +QASG+++K
Sbjct: 368 KQENQRKAEDEMKFLQASGKVSK 390
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,961,522
Number of Sequences: 59808
Number of extensions: 383109
Number of successful extensions: 1012
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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