Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D23
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 79 4e-15
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 79 4e-15
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 79 4e-15
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 76 4e-14
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 76 4e-14
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 72 5e-13
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 72 5e-13
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 59 3e-09
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 55 6e-08
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 52 4e-07
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 52 5e-07
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 52 5e-07
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 51 9e-07
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 37 0.021
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 31 1.1
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 31 1.1
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.4
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.4
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.4
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.2
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 28 9.8
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 79.0 bits (186), Expect = 4e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEE 589
K VP KEHP +NFVG++LGP+G T KQL+++T CK+ V GRGSMRD++KEE
Sbjct: 91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE 142
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 79.0 bits (186), Expect = 4e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEE 589
K VP KEHP +NFVG++LGP+G T KQL+++T CK+ V GRGSMRD++KEE
Sbjct: 133 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE 184
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 79.0 bits (186), Expect = 4e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEE 589
K VP KEHP +NFVG++LGP+G T KQL+++T CK+ V GRGSMRD++KEE
Sbjct: 91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE 142
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 75.8 bits (178), Expect = 4e-14
Identities = 37/78 (47%), Positives = 49/78 (62%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRXVIRP 613
K LVPI HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL P
Sbjct: 132 KILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDP 191
Query: 614 *VLSSS*RSHVEISAIAP 667
S HV++ +AP
Sbjct: 192 QHAHFSGPLHVKVETVAP 209
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 75.8 bits (178), Expect = 4e-14
Identities = 37/78 (47%), Positives = 49/78 (62%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRXVIRP 613
K LVPI HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL P
Sbjct: 132 KILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDP 191
Query: 614 *VLSSS*RSHVEISAIAP 667
S HV++ +AP
Sbjct: 192 QHAHFSGPLHVKVETVAP 209
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 72.1 bits (169), Expect = 5e-13
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K VP E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHR 262
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 72.1 bits (169), Expect = 5e-13
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K VP E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHR 262
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 59.3 bits (137), Expect = 3e-09
Identities = 22/42 (52%), Positives = 37/42 (88%)
Frame = +2
Query: 440 LVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 565
+VP++++PK+NFVG++LGP+G T+KQL+++T C++ V GR S
Sbjct: 76 MVPVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRAS 117
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 55.2 bits (127), Expect = 6e-08
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = +2
Query: 440 LVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGR 559
+VP+++ P +NFVG+LLGP+G T KQL+ T C++ +LGR
Sbjct: 117 MVPVEKFPDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR 156
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 52.4 bits (120), Expect = 4e-07
Identities = 17/41 (41%), Positives = 32/41 (78%)
Frame = +2
Query: 443 VPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 565
+P++ +P +NF+G+++GP+G T KQL++DT C++ + G S
Sbjct: 127 IPVETYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHS 167
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 574
K +P ++ P NFVG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 306 KVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 574
K +P ++ P NFVG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 306 KVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +2
Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K P + N VG+L+GP+G T++QL++D CK+ + G+G +D KEE LR
Sbjct: 117 KVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLR 171
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +2
Query: 464 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K N++G++LGP G + + ++ + + G GS+R++ +E +R
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVR 195
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 470 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 583
N G ++G G+T++QLQE + CKM V S+ D+ K
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 139
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 470 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 583
N G ++G G+T++QLQE + CKM V S+ D+ K
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 202
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 470 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 583
N G ++G G+T++QLQE + CKM V S+ D+ K
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 180
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 476 VGKLLGPKGNTMKQLQEDT 532
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 476 VGKLLGPKGNTMKQLQEDT 532
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 476 VGKLLGPKGNTMKQLQEDT 532
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 570 LIEPLPSTAILHSVSSCNCFIVFPF 496
L+EP+ I H V CNC++ PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 189 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 365
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 473 FVGKLLGPKGNTMKQLQEDTLCKM 544
F+GKL+G T+ L+ +T C++
Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,640
Number of Sequences: 27780
Number of extensions: 300806
Number of successful extensions: 692
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -