SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D23
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna bin...    79   4e-15
AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna bin...    79   4e-15
AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna bin...    79   4e-15
AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    76   4e-14
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    76   4e-14
Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical pr...    72   5e-13
U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.        72   5e-13
AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    59   3e-09
Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical p...    55   6e-08
AF047659-9|AAC04421.1|  254|Caenorhabditis elegans Hypothetical ...    52   4e-07
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    52   5e-07
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    52   5e-07
U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical p...    51   9e-07
Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical pr...    37   0.021
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        30   2.4  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    30   2.4  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    30   2.4  
Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    29   4.2  
U80453-5|AAK31443.1|  378|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform a protein.
          Length = 328

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEE 589
           K  VP KEHP +NFVG++LGP+G T KQL+++T CK+ V GRGSMRD++KEE
Sbjct: 91  KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE 142


>AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform c protein.
          Length = 445

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEE 589
           K  VP KEHP +NFVG++LGP+G T KQL+++T CK+ V GRGSMRD++KEE
Sbjct: 133 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE 184


>AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform b protein.
          Length = 403

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEE 589
           K  VP KEHP +NFVG++LGP+G T KQL+++T CK+ V GRGSMRD++KEE
Sbjct: 91  KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEE 142


>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRXVIRP 613
           K LVPI  HP FNF+GK+LGPKG T++ L +   C + +LGRGS +DR+KE EL     P
Sbjct: 132 KILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDP 191

Query: 614 *VLSSS*RSHVEISAIAP 667
                S   HV++  +AP
Sbjct: 192 QHAHFSGPLHVKVETVAP 209


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRXVIRP 613
           K LVPI  HP FNF+GK+LGPKG T++ L +   C + +LGRGS +DR+KE EL     P
Sbjct: 132 KILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDP 191

Query: 614 *VLSSS*RSHVEISAIAP 667
                S   HV++  +AP
Sbjct: 192 QHAHFSGPLHVKVETVAP 209


>Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical
           protein T23G11.3 protein.
          Length = 463

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 31/55 (56%), Positives = 41/55 (74%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K  VP  E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE   R
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHR 262


>U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.
          Length = 463

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 31/55 (56%), Positives = 41/55 (74%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K  VP  E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE   R
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHR 262


>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 22/42 (52%), Positives = 37/42 (88%)
 Frame = +2

Query: 440 LVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 565
           +VP++++PK+NFVG++LGP+G T+KQL+++T C++ V GR S
Sbjct: 76  MVPVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRAS 117


>Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical
           protein Y57G11C.36 protein.
          Length = 380

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 21/40 (52%), Positives = 32/40 (80%)
 Frame = +2

Query: 440 LVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGR 559
           +VP+++ P +NFVG+LLGP+G T KQL+  T C++ +LGR
Sbjct: 117 MVPVEKFPDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR 156


>AF047659-9|AAC04421.1|  254|Caenorhabditis elegans Hypothetical
           protein K07H8.9 protein.
          Length = 254

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 17/41 (41%), Positives = 32/41 (78%)
 Frame = +2

Query: 443 VPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 565
           +P++ +P +NF+G+++GP+G T KQL++DT C++ + G  S
Sbjct: 127 IPVETYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHS 167


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 20/47 (42%), Positives = 34/47 (72%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 574
           K  +P ++ P  NFVG L+GP+GNT+K L+ +T  K+ + G+GS+++
Sbjct: 306 KVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 20/47 (42%), Positives = 34/47 (72%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 574
           K  +P ++ P  NFVG L+GP+GNT+K L+ +T  K+ + G+GS+++
Sbjct: 306 KVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352


>U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical
           protein B0280.17 protein.
          Length = 235

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 23/55 (41%), Positives = 35/55 (63%)
 Frame = +2

Query: 434 KFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K   P +     N VG+L+GP+G T++QL++D  CK+ + G+G  +D  KEE LR
Sbjct: 117 KVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLR 171


>Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical
           protein F54D1.1 protein.
          Length = 278

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +2

Query: 464 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K N++G++LGP G + + ++      + + G GS+R++  +E +R
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVR 195


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 470 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 583
           N  G ++G  G+T++QLQE + CKM  V    S+ D+ K
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 139


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 470 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 583
           N  G ++G  G+T++QLQE + CKM  V    S+ D+ K
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 202


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 470 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 583
           N  G ++G  G+T++QLQE + CKM  V    S+ D+ K
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 180


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +2

Query: 476 VGKLLGPKGNTMKQLQEDT 532
           VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +2

Query: 476 VGKLLGPKGNTMKQLQEDT 532
           VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +2

Query: 476 VGKLLGPKGNTMKQLQEDT 532
           VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194


>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 570 LIEPLPSTAILHSVSSCNCFIVFPF 496
           L+EP+    I H V  CNC++  PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 189 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 365
           TTQ  P+E D+   +  K+ EKA     E+  E  KL      L  +L + + T  + S
Sbjct: 4   TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62


>U80453-5|AAK31443.1|  378|Caenorhabditis elegans Hypothetical
           protein C23H3.3 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 473 FVGKLLGPKGNTMKQLQEDTLCKM 544
           F+GKL+G    T+  L+ +T C++
Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,640
Number of Sequences: 27780
Number of extensions: 300806
Number of successful extensions: 692
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -