Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D23
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    28   0.096
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.89 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 0.096
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL 299
           +KY+KNG      K++  +  P ++    E     N++ GE M   ++E  +L
Sbjct: 164 EKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSEL 216


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +3

Query: 279 LSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRVQTNQSHS*SSWCQLRN 458
           L EK K++  + P   K+ D   T       ++ D    DV  +Q  +S   S W +LRN
Sbjct: 406 LQEKTKIDLLEIPPIRKISDCSTTS-----SLSGDES--DVVELQPVKSSKSSGWRKLRN 458

Query: 459 ILNST 473
           I++ T
Sbjct: 459 IVHWT 463


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 126 LIKMADKYDKNGYNSGDF 179
           LIK++D  ++  YN+GD+
Sbjct: 229 LIKISDVLEETFYNNGDY 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,652
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)