Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_D23
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38610.2 68415.m04743 KH domain-containing protein 70 2e-12
At2g38610.1 68415.m04742 KH domain-containing protein 70 2e-12
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 70 2e-12
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 70 2e-12
At5g56140.1 68418.m07003 KH domain-containing protein 67 1e-11
At3g08620.1 68416.m01001 KH domain-containing protein 67 1e-11
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 65 5e-11
At5g51300.2 68418.m06360 splicing factor-related contains simila... 61 8e-10
At5g51300.1 68418.m06359 splicing factor-related contains simila... 61 8e-10
At3g32940.1 68416.m04174 expressed protein 38 0.011
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.98
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 31 1.3
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.0
At3g28270.2 68416.m03531 expressed protein similar to At14a prot... 29 4.0
At3g28270.1 68416.m03530 expressed protein similar to At14a prot... 29 4.0
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 29 5.2
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 29 5.2
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 29 5.2
At5g52280.1 68418.m06488 protein transport protein-related low s... 28 6.9
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 28 6.9
At2g38995.1 68415.m04792 expressed protein 28 9.1
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/82 (39%), Positives = 55/82 (67%)
Frame = +2
Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRX 601
K L+ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE++LR
Sbjct: 135 KRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRG 194
Query: 602 VIRP*VLSSS*RSHVEISAIAP 667
RP + + H+ I A P
Sbjct: 195 --RPGYEHLNEQLHILIEADLP 214
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/82 (39%), Positives = 55/82 (67%)
Frame = +2
Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRX 601
K L+ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE++LR
Sbjct: 135 KRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRG 194
Query: 602 VIRP*VLSSS*RSHVEISAIAP 667
RP + + H+ I A P
Sbjct: 195 --RPGYEHLNEQLHILIEADLP 214
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +2
Query: 410 PNQP--KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 583
PN P K ++ VP+ ++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D K
Sbjct: 140 PNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK 199
Query: 584 EEELRXVIRP*VLSSS*RSHVEISAIAP-PAXGSRXELHMHLAE 712
EE+L+ +P HV I A P SR E +H E
Sbjct: 200 EEKLKG--KPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLE 241
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +2
Query: 410 PNQP--KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 583
PN P K ++ VP+ ++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D K
Sbjct: 140 PNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK 199
Query: 584 EEELRXVIRP*VLSSS*RSHVEISAIAP-PAXGSRXELHMHLAE 712
EE+L+ +P HV I A P SR E +H E
Sbjct: 200 EEKLKG--KPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLE 241
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/59 (44%), Positives = 44/59 (74%)
Frame = +2
Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K ++ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + GRGS++D KEE +R
Sbjct: 165 KRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMR 223
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/59 (44%), Positives = 46/59 (77%)
Frame = +2
Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K L+ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KEE+L+
Sbjct: 134 KRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLK 192
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 65.3 bits (152), Expect = 5e-11
Identities = 24/59 (40%), Positives = 45/59 (76%)
Frame = +2
Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
K ++ +P+ ++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE+ +R
Sbjct: 406 KRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMR 464
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 61.3 bits (142), Expect = 8e-10
Identities = 21/58 (36%), Positives = 42/58 (72%)
Frame = +2
Query: 419 PKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEE 592
PK K +P+KE P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ + +++
Sbjct: 239 PKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK 296
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 61.3 bits (142), Expect = 8e-10
Identities = 21/58 (36%), Positives = 42/58 (72%)
Frame = +2
Query: 419 PKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEE 592
PK K +P+KE P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ + +++
Sbjct: 239 PKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK 296
>At3g32940.1 68416.m04174 expressed protein
Length = 607
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +2
Query: 443 VPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 556
+ +KEH F+F+ + G +G+T K+L+++T K+ + G
Sbjct: 139 IDVKEHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176
>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 489
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3
Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 290
D++D GD KR + EL +GE+G K+ EKA E+ R L+EK
Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 410 PNQPKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 556
P K + LVP + G L+G +G T+K +QE + C + VLG
Sbjct: 272 PPPSKVSTRLLVPASQ------AGSLIGKQGGTVKAIQEASACIVRVLG 314
>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 171 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 344
GD KR + EL +GE+G K+ EKA E+ R L+EK +K P +I+ E
Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453
>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380
K EE++++ E+GIK NE+A E + L+ + L ID E + +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335
Query: 381 DSKYVD 398
SK V+
Sbjct: 336 ISKKVE 341
>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380
K EE++++ E+GIK NE+A E + L+ + L ID E + +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335
Query: 381 DSKYVD 398
SK V+
Sbjct: 336 ISKKVE 341
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 476 VGKLLGPKGNTMKQLQEDTLCKMAV 550
VG ++G GN +KQLQ+ T K+ V
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 476 VGKLLGPKGNTMKQLQEDTLCKMAV 550
VG ++G GN +KQLQ+ T K+ V
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 493 SKRKHY-EAITRRHTVQDGCTRQGLNERPXKRRRTPP 600
S++KHY + T + V+DG +G E+ ++ PP
Sbjct: 285 SRKKHYVDQYTTKEPVEDGLIGRGEEEKVENEKKRPP 321
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +3
Query: 126 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 302
L++ A K +++ G +SG+ + +T + + E+LD + K NE+ + EL E L
Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465
Query: 303 NSKFP-LSMKLIDQEVTKVQASGRITKD 383
+ +S KL QE + + +KD
Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 150 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 287
D+ Y G F+ +GK ++ QNGE I E G +RE+ E
Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222
>At2g38995.1 68415.m04792 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 567 IEPLPSTAILHSVSSCNCFIVFPFGPNSFPTKLNLGCSLIGTKN 436
IEPL + L S CFI+F G F T+ N + G KN
Sbjct: 11 IEPLSPVSQLFVSPSLYCFIIFTLG---FQTRCNPSTIVEGVKN 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,527
Number of Sequences: 28952
Number of extensions: 269810
Number of successful extensions: 652
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -