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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D23
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38610.2 68415.m04743 KH domain-containing protein                  70   2e-12
At2g38610.1 68415.m04742 KH domain-containing protein                  70   2e-12
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p...    70   2e-12
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p...    70   2e-12
At5g56140.1 68418.m07003 KH domain-containing protein                  67   1e-11
At3g08620.1 68416.m01001 KH domain-containing protein                  67   1e-11
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus...    65   5e-11
At5g51300.2 68418.m06360 splicing factor-related contains simila...    61   8e-10
At5g51300.1 68418.m06359 splicing factor-related contains simila...    61   8e-10
At3g32940.1 68416.m04174 expressed protein                             38   0.011
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.98 
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    31   1.3  
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.0  
At3g28270.2 68416.m03531 expressed protein similar to At14a prot...    29   4.0  
At3g28270.1 68416.m03530 expressed protein similar to At14a prot...    29   4.0  
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei...    29   5.2  
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei...    29   5.2  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    29   5.2  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   6.9  
At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    28   6.9  
At2g38995.1 68415.m04792 expressed protein                             28   9.1  

>At2g38610.2 68415.m04743 KH domain-containing protein
          Length = 286

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/82 (39%), Positives = 55/82 (67%)
 Frame = +2

Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRX 601
           K  L+  +P+  +P FNFVG+LLGP+GN++K+++  T C++ + G+GS++D +KE++LR 
Sbjct: 135 KRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRG 194

Query: 602 VIRP*VLSSS*RSHVEISAIAP 667
             RP     + + H+ I A  P
Sbjct: 195 --RPGYEHLNEQLHILIEADLP 214


>At2g38610.1 68415.m04742 KH domain-containing protein
          Length = 286

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/82 (39%), Positives = 55/82 (67%)
 Frame = +2

Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRX 601
           K  L+  +P+  +P FNFVG+LLGP+GN++K+++  T C++ + G+GS++D +KE++LR 
Sbjct: 135 KRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRG 194

Query: 602 VIRP*VLSSS*RSHVEISAIAP 667
             RP     + + H+ I A  P
Sbjct: 195 --RPGYEHLNEQLHILIEADLP 214


>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
           putative similar to GB:AAC67357
          Length = 264

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
 Frame = +2

Query: 410 PNQP--KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 583
           PN P  K  ++  VP+ ++P +NFVG++LGP+GN++K+++  T C++ + GRGS++D  K
Sbjct: 140 PNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK 199

Query: 584 EEELRXVIRP*VLSSS*RSHVEISAIAP-PAXGSRXELHMHLAE 712
           EE+L+   +P         HV I A  P     SR E  +H  E
Sbjct: 200 EEKLKG--KPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLE 241


>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
           putative similar to GB:AAC67357
          Length = 298

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
 Frame = +2

Query: 410 PNQP--KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 583
           PN P  K  ++  VP+ ++P +NFVG++LGP+GN++K+++  T C++ + GRGS++D  K
Sbjct: 140 PNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK 199

Query: 584 EEELRXVIRP*VLSSS*RSHVEISAIAP-PAXGSRXELHMHLAE 712
           EE+L+   +P         HV I A  P     SR E  +H  E
Sbjct: 200 EEKLKG--KPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLE 241


>At5g56140.1 68418.m07003 KH domain-containing protein 
          Length = 315

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/59 (44%), Positives = 44/59 (74%)
 Frame = +2

Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K  ++  +P+  +P FNFVG+LLGP+GN++K+++  T C++ + GRGS++D  KEE +R
Sbjct: 165 KRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMR 223


>At3g08620.1 68416.m01001 KH domain-containing protein 
          Length = 283

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/59 (44%), Positives = 46/59 (77%)
 Frame = +2

Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K  L+  +P+  +P FNFVG+LLGP+GN++K+++  T C++ + G+GS++D +KEE+L+
Sbjct: 134 KRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLK 192


>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
           musculus
          Length = 555

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 24/59 (40%), Positives = 45/59 (76%)
 Frame = +2

Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598
           K  ++  +P+ ++P +NFVG+LLGP+GN++K+++  T C++ + GRGS++D  KE+ +R
Sbjct: 406 KRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMR 464


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 21/58 (36%), Positives = 42/58 (72%)
 Frame = +2

Query: 419 PKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEE 592
           PK   K  +P+KE P +NF+G ++GP+GNT K+++ +T  K+ + G+GS+++ + +++
Sbjct: 239 PKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK 296


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 21/58 (36%), Positives = 42/58 (72%)
 Frame = +2

Query: 419 PKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEE 592
           PK   K  +P+KE P +NF+G ++GP+GNT K+++ +T  K+ + G+GS+++ + +++
Sbjct: 239 PKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK 296


>At3g32940.1 68416.m04174 expressed protein
          Length = 607

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +2

Query: 443 VPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 556
           + +KEH  F+F+  + G +G+T K+L+++T  K+ + G
Sbjct: 139 IDVKEHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176


>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 489

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +3

Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 290
           D++D      GD KR   +    EL  +GE+G K+ EKA E+ R  L+EK
Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 410 PNQPKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 556
           P   K   + LVP  +       G L+G +G T+K +QE + C + VLG
Sbjct: 272 PPPSKVSTRLLVPASQ------AGSLIGKQGGTVKAIQEASACIVRVLG 314


>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 467

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +3

Query: 171 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 344
           GD KR   +    EL  +GE+G K+ EKA E+ R  L+EK     +K P    +I+ E
Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453


>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 374

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +3

Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380
           K EE++++ E+GIK NE+A E +  L+        +   L    ID E  +      +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335

Query: 381 DSKYVD 398
            SK V+
Sbjct: 336 ISKKVE 341


>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 374

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +3

Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380
           K EE++++ E+GIK NE+A E +  L+        +   L    ID E  +      +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335

Query: 381 DSKYVD 398
            SK V+
Sbjct: 336 ISKKVE 341


>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 824

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 476 VGKLLGPKGNTMKQLQEDTLCKMAV 550
           VG ++G  GN +KQLQ+ T  K+ V
Sbjct: 58  VGAVIGKSGNVIKQLQQSTGAKIRV 82


>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 857

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 476 VGKLLGPKGNTMKQLQEDTLCKMAV 550
           VG ++G  GN +KQLQ+ T  K+ V
Sbjct: 58  VGAVIGKSGNVIKQLQQSTGAKIRV 82


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 493 SKRKHY-EAITRRHTVQDGCTRQGLNERPXKRRRTPP 600
           S++KHY +  T +  V+DG   +G  E+    ++ PP
Sbjct: 285 SRKKHYVDQYTTKEPVEDGLIGRGEEEKVENEKKRPP 321


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +3

Query: 126 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 302
           L++ A K +++ G +SG+ + +T + + E+LD   +   K NE+    + EL  E   L 
Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465

Query: 303 NSKFP-LSMKLIDQEVTKVQASGRITKD 383
              +  +S KL  QE +  +     +KD
Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493


>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 150 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 287
           D+  Y  G F+    +GK ++  QNGE  I   E  G  +RE+  E
Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222


>At2g38995.1 68415.m04792 expressed protein
          Length = 479

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 567 IEPLPSTAILHSVSSCNCFIVFPFGPNSFPTKLNLGCSLIGTKN 436
           IEPL   + L    S  CFI+F  G   F T+ N    + G KN
Sbjct: 11  IEPLSPVSQLFVSPSLYCFIIFTLG---FQTRCNPSTIVEGVKN 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,527
Number of Sequences: 28952
Number of extensions: 269810
Number of successful extensions: 652
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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