BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_D23 (858 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g38610.2 68415.m04743 KH domain-containing protein 70 2e-12 At2g38610.1 68415.m04742 KH domain-containing protein 70 2e-12 At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 70 2e-12 At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 70 2e-12 At5g56140.1 68418.m07003 KH domain-containing protein 67 1e-11 At3g08620.1 68416.m01001 KH domain-containing protein 67 1e-11 At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 65 5e-11 At5g51300.2 68418.m06360 splicing factor-related contains simila... 61 8e-10 At5g51300.1 68418.m06359 splicing factor-related contains simila... 61 8e-10 At3g32940.1 68416.m04174 expressed protein 38 0.011 At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.98 At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 31 1.3 At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.0 At3g28270.2 68416.m03531 expressed protein similar to At14a prot... 29 4.0 At3g28270.1 68416.m03530 expressed protein similar to At14a prot... 29 4.0 At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 29 5.2 At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 29 5.2 At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 29 5.2 At5g52280.1 68418.m06488 protein transport protein-related low s... 28 6.9 At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 28 6.9 At2g38995.1 68415.m04792 expressed protein 28 9.1 >At2g38610.2 68415.m04743 KH domain-containing protein Length = 286 Score = 69.7 bits (163), Expect = 2e-12 Identities = 32/82 (39%), Positives = 55/82 (67%) Frame = +2 Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRX 601 K L+ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE++LR Sbjct: 135 KRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRG 194 Query: 602 VIRP*VLSSS*RSHVEISAIAP 667 RP + + H+ I A P Sbjct: 195 --RPGYEHLNEQLHILIEADLP 214 >At2g38610.1 68415.m04742 KH domain-containing protein Length = 286 Score = 69.7 bits (163), Expect = 2e-12 Identities = 32/82 (39%), Positives = 55/82 (67%) Frame = +2 Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRX 601 K L+ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE++LR Sbjct: 135 KRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRG 194 Query: 602 VIRP*VLSSS*RSHVEISAIAP 667 RP + + H+ I A P Sbjct: 195 --RPGYEHLNEQLHILIEADLP 214 >At1g09660.2 68414.m01085 KH domain-containing quaking protein, putative similar to GB:AAC67357 Length = 264 Score = 69.7 bits (163), Expect = 2e-12 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%) Frame = +2 Query: 410 PNQP--KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 583 PN P K ++ VP+ ++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D K Sbjct: 140 PNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK 199 Query: 584 EEELRXVIRP*VLSSS*RSHVEISAIAP-PAXGSRXELHMHLAE 712 EE+L+ +P HV I A P SR E +H E Sbjct: 200 EEKLKG--KPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLE 241 >At1g09660.1 68414.m01084 KH domain-containing quaking protein, putative similar to GB:AAC67357 Length = 298 Score = 69.7 bits (163), Expect = 2e-12 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%) Frame = +2 Query: 410 PNQP--KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 583 PN P K ++ VP+ ++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D K Sbjct: 140 PNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK 199 Query: 584 EEELRXVIRP*VLSSS*RSHVEISAIAP-PAXGSRXELHMHLAE 712 EE+L+ +P HV I A P SR E +H E Sbjct: 200 EEKLKG--KPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLE 241 >At5g56140.1 68418.m07003 KH domain-containing protein Length = 315 Score = 67.3 bits (157), Expect = 1e-11 Identities = 26/59 (44%), Positives = 44/59 (74%) Frame = +2 Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598 K ++ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + GRGS++D KEE +R Sbjct: 165 KRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMR 223 >At3g08620.1 68416.m01001 KH domain-containing protein Length = 283 Score = 67.3 bits (157), Expect = 1e-11 Identities = 26/59 (44%), Positives = 46/59 (77%) Frame = +2 Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598 K L+ +P+ +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KEE+L+ Sbjct: 134 KRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLK 192 >At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus musculus Length = 555 Score = 65.3 bits (152), Expect = 5e-11 Identities = 24/59 (40%), Positives = 45/59 (76%) Frame = +2 Query: 422 KSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 598 K ++ +P+ ++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE+ +R Sbjct: 406 KRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMR 464 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 61.3 bits (142), Expect = 8e-10 Identities = 21/58 (36%), Positives = 42/58 (72%) Frame = +2 Query: 419 PKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEE 592 PK K +P+KE P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ + +++ Sbjct: 239 PKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK 296 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 61.3 bits (142), Expect = 8e-10 Identities = 21/58 (36%), Positives = 42/58 (72%) Frame = +2 Query: 419 PKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEE 592 PK K +P+KE P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ + +++ Sbjct: 239 PKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK 296 >At3g32940.1 68416.m04174 expressed protein Length = 607 Score = 37.5 bits (83), Expect = 0.011 Identities = 13/38 (34%), Positives = 26/38 (68%) Frame = +2 Query: 443 VPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 556 + +KEH F+F+ + G +G+T K+L+++T K+ + G Sbjct: 139 IDVKEHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176 >At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 489 Score = 31.1 bits (67), Expect = 0.98 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = +3 Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 290 D++D GD KR + EL +GE+G K+ EKA E+ R L+EK Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461 >At3g04610.1 68416.m00493 KH domain-containing protein similar putative nucleic acid binding protein GB:CAB39665 [Arabidopsis thaliana]; Pfam HMM hit: KH domain family of RNA binding proteins Length = 577 Score = 30.7 bits (66), Expect = 1.3 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 410 PNQPKSQLKFLVPIKEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 556 P K + LVP + G L+G +G T+K +QE + C + VLG Sbjct: 272 PPPSKVSTRLLVPASQ------AGSLIGKQGGTVKAIQEASACIVRVLG 314 >At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 467 Score = 29.5 bits (63), Expect = 3.0 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +3 Query: 171 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 344 GD KR + EL +GE+G K+ EKA E+ R L+EK +K P +I+ E Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453 >At3g28270.2 68416.m03531 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana] Length = 374 Score = 29.1 bits (62), Expect = 4.0 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +3 Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380 K EE++++ E+GIK NE+A E + L+ + L ID E + +T+ Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335 Query: 381 DSKYVD 398 SK V+ Sbjct: 336 ISKKVE 341 >At3g28270.1 68416.m03530 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana] Length = 374 Score = 29.1 bits (62), Expect = 4.0 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +3 Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380 K EE++++ E+GIK NE+A E + L+ + L ID E + +T+ Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335 Query: 381 DSKYVD 398 SK V+ Sbjct: 336 ISKKVE 341 >At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein (HEN4) contains similarity to RNA-binding protein; identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404; contains Pfam domain PF00013: KH domain; identical to cDNA HEN4 (HEN4) GI:28261402 Length = 824 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 476 VGKLLGPKGNTMKQLQEDTLCKMAV 550 VG ++G GN +KQLQ+ T K+ V Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82 >At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein (HEN4) contains similarity to RNA-binding protein; identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404; contains Pfam domain PF00013: KH domain; identical to cDNA HEN4 (HEN4) GI:28261402 Length = 857 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 476 VGKLLGPKGNTMKQLQEDTLCKMAV 550 VG ++G GN +KQLQ+ T K+ V Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82 >At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 437 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +1 Query: 493 SKRKHY-EAITRRHTVQDGCTRQGLNERPXKRRRTPP 600 S++KHY + T + V+DG +G E+ ++ PP Sbjct: 285 SRKKHYVDQYTTKEPVEDGLIGRGEEEKVENEKKRPP 321 >At5g52280.1 68418.m06488 protein transport protein-related low similarity to SP|P25386 Intracellular protein transport protein USO1 {Saccharomyces cerevisiae} Length = 853 Score = 28.3 bits (60), Expect = 6.9 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Frame = +3 Query: 126 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 302 L++ A K +++ G +SG+ + +T + + E+LD + K NE+ + EL E L Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465 Query: 303 NSKFP-LSMKLIDQEVTKVQASGRITKD 383 + +S KL QE + + +KD Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493 >At5g16720.1 68418.m01958 expressed protein contains Pfam profile PF04576: Protein of unknown function, DUF593 Length = 675 Score = 28.3 bits (60), Expect = 6.9 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +3 Query: 150 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 287 D+ Y G F+ +GK ++ QNGE I E G +RE+ E Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222 >At2g38995.1 68415.m04792 expressed protein Length = 479 Score = 27.9 bits (59), Expect = 9.1 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = -1 Query: 567 IEPLPSTAILHSVSSCNCFIVFPFGPNSFPTKLNLGCSLIGTKN 436 IEPL + L S CFI+F G F T+ N + G KN Sbjct: 11 IEPLSPVSQLFVSPSLYCFIIFTLG---FQTRCNPSTIVEGVKN 51 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,533,527 Number of Sequences: 28952 Number of extensions: 269810 Number of successful extensions: 652 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 652 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1999652000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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