Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_D21
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    26   6.0  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   6.0  

>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  PPSPPRHKQSNILFITNLVRPFTLLQLKNLLQRTGRIEE 157
           PPS    + ++ILFI NL    T  ++ +L  R G + +
Sbjct: 2   PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQ 40


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 305 LLLKSPHVKSLDLIQAMSPHARH-VLFQQLDLQFHISHSI*ILFYLSKTH-FPLS 147
           +L  S +++    + A +P A   +LF+  D++ H   S  IL +LSK H  P+S
Sbjct: 207 VLSDSRYLELSGAVVAFAPDASSSLLFELADIKQHKKTSADILIFLSKDHNLPVS 261


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 406 FQILLPK-PILNCSWNCRR 353
           F  + PK PI+ CSWNC R
Sbjct: 832 FLHIQPKEPIIFCSWNCMR 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,882
Number of Sequences: 5004
Number of extensions: 58491
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)